Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq603 136 5e-27 seq4 132 6e-26 seq447 129 7e-25 seq3829 98.7 1e-15 >seq603 Length=994148 Score = 136 bits (150), Expect = 5e-27 Identities = 308/453 (68%), Gaps = 10/453 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || |||||||||||||| || ||||| || | || | ||| |||||| Sbjct 841489 GTAGTCGCCGACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 841548 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 125876 | || || ||||| | ||| | || | | ||| || | || ||||| | Sbjct 841549 CCAGTCGAAGGGGTTGGTGACGTTGTACATCTTCTTGCAGCCGAGCGCCATT-AGGAGGC 841607 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTTA 125935 | || | |||| |||| ||||||| ||| || |||||| |||| ||| | | Sbjct 841608 GGTCAGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGA 841667 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 | ||||| ||||| ||| ||| | |||| || || |||||||| ||||| || Sbjct 841668 CG-GGGAGAGCGTCGCAGACGAAGTTCCTCTCGATGTCGACGGCTTCGGCGACGATTGCA 841726 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAAC 126052 | | | | || | || | | ||| | | ||| | || ||| || ||| || Sbjct 841727 CGGACGCGGGCCTCGTCAAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAAG 841783 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||| || |||||||| ||||||||||| || || |||||| || || |||||| Sbjct 841784 TCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 841843 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 || || |||||||| | |||||| || || || || || |||||||| ||||| ||||| Sbjct 841844 AGGCCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCCGAGAAAAAGATGCCCTCG 841903 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || ||||| || | || ||||| || ||| Sbjct 841904 ACGCAGGCGAAGGCGACTAGGCGCTCGGCGAAG 841936 >seq4 Length=1057841 Score = 132 bits (146), Expect = 6e-26 Identities = 312/458 (68%), Gaps = 20/458 (4%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 125087 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCAT 125146 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 | || || || || | ||| | || || ||| || || | | |||| Sbjct 125147 CCAGTCGAAGGGATTGGCGACGTTG---TACATCTTCTTG-CAGCCGAG-CGCCATGAGC 125201 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 125931 || || || | |||| |||| || |||| |||| | |||||| |||| ||| Sbjct 125202 AGGCGGTCGGCGACGAACTCGATATACTGGCTCATCAGGACTCCGTTCATGCCGACGAGA 125261 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || ||||||||||| ||| |||| || | || || || ||||| || ||||| Sbjct 125262 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTTTCGATGTCGACGGCGTCAACGACGAT 125320 Query 125992 GGCGTGAATG-GTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGG 126047 || | | | | ||| | || | | ||| | | ||| | || ||| || | Sbjct 125321 CTCGCGGACGCGGGTCTCATCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CATG- 125376 Query 126048 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTG 126107 | || || ||| || |||||||| ||||||||||| || || |||||| || || | Sbjct 125377 CGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTAAGACCCG 125436 Query 126108 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTC 126167 ||||||| || |||||||| | ||| || || || || || || |||||||||||||| | Sbjct 125437 GCATGAGGCCGCGCTTCTTAAGCCAAAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGC 125496 Query 126168 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 |||| || || ||||| |||| ||| ||||| || ||| Sbjct 125497 CCTCGACGCAGGCGAAAGCAACGAGGCGCTCGGCGAAG 125534 >seq447 Length=1725674 Score = 129 bits (142), Expect = 7e-25 Identities = 257/379 (68%), Gaps = 4/379 (1%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 |||| || || ||||||||| | |||||||| || || || |||| || | ||| Sbjct 1583923 ACGGCGACCTGACGATCAAACCTCCCTGGGCGAAGAAGCGCTGCGTCCAGCACATCTGGC 1583982 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 | ||| || || |||| |||| || || | | |||| ||||||||||| ||| Sbjct 1583983 CTGTTTGTTGCGGCGAGCACAATGACACCGCTGTTCCCGGCAAATCCATCCATCTCCGTC 1584042 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGC 10952 ||||| || |||||||| || || | |||||||| | | | | | || |||| | Sbjct 1584043 AAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCC--CCCTCCGAGTCCTGCACCAC 1584100 Query 10953 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGG 11012 | ||| | |||||||| ||||||||||| ||||| || || ||||| || | || Sbjct 1584101 GCTGCCTCCCGACGGCATCAATTTCATCAATGAACACAATGCACGGCGCCTTGGCCTTGG 1584160 Query 11013 CAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAAT 11072 | || || | ||| | ||| || || || ||||| || |||| || || || | Sbjct 1584161 CCTTCTCGAACAGATCCCTGACCCTGGACGCGCCCACACCGACGAACAGCTCGACGAACT 1584220 Query 11073 TGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 11132 || ||||| || || |||||| ||| || || || |||| ||| || || || | Sbjct 1584221 CGGAGGCGGCGCAGGAGAAGAAGGGCACGCCGGCCTCCCCAGCGACGGCACGCGCCAGCA 1584280 Query 11133 GGGTCTTCCCCGTCCCAGG 11151 ||||||| || || || || Sbjct 1584281 GGGTCTTGCCAGTTCCGGG 1584299 >seq3829 Length=445942 Score = 98.7 bits (108), Expect = 1e-15 Identities = 250/378 (66%), Gaps = 2/378 (1%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||| || ||||||||| | ||||| || || || || ||| || | ||| Sbjct 322180 ACGGTGACCTGACGATCAAACCTCCCTGGCCGAAGAAGCGCTGAGTCCAGCACATCTGGC 322239 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 | ||| || || |||| |||| || || | | |||| || |||||||| ||| Sbjct 322240 CTGTTTGTTGCGGCGAGCACAATGACACCACTGTTCCCGGCAAATCCGTCCATCTCCGTC 322299 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT-CGCGGGCATACCACCCGCACTGCG 10953 ||||| || || ||||| || || | |||||||| | | | | | || || | || Sbjct 322300 AAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCTGCGCCACG 322358 Query 10954 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGC 11013 ||| | |||||||| ||||||||||| ||||| ||||| ||||| || | ||| Sbjct 322359 CTGCCTCCCGACGGCATCAATTTCATCAATGAACACGATGCACGGCGCCTTGGCCTTGGC 322418 Query 11014 AACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073 || || | || | ||| || || || ||||| || |||| || || || | Sbjct 322419 CTTCTCGAACAGGTCCCTGACCCTGGACGCGCCCACACCGACGAACAGCTCGACGAACTC 322478 Query 11074 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 11133 | |||| || || ||| || ||| || || || |||| ||| || || || || Sbjct 322479 CGACGCGGCGCAGGAGAAGAACGGTACGCCGGCCTCCCCAGCGACGGCACGCGCCAGCAG 322538 Query 11134 GGTCTTCCCCGTCCCAGG 11151 |||||| || || || || Sbjct 322539 GGTCTTGCCAGTTCCGGG 322556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597319834587760