Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1848 111 1e-19 seq4493 86.0 6e-12 seq891 86.0 6e-12 seq192 86.0 6e-12 seq4197 82.4 7e-11 >seq1848 Length=11040 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || |||| || || ||||| ||||| || || ||| || ||| | ||| ||| Sbjct 6070 ACAAGGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCTGCCATCCTCC 6011 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | ||||| |||||||||||||| || ||||| || || || || Sbjct 6010 AGCTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 5951 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | ||||||||||||||| || || ||||| | || || Sbjct 5950 ATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAAGACTCTACCTCAAGAGTGATGGTCTT 5892 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| || || || || ||||| Sbjct 5891 GCCGGTCAGAGTCTTCACGAAGATCTGCAT 5862 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || || || || || || ||||| ||||| || || ||| Sbjct 5863 ATGCCTCCCCTGAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 5804 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || |||| || || || || | ||||| |||||||||||||| Sbjct 5803 GCGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAAGCGTTGCTGGTCCGGG 5744 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || || || || |||| || | || | ||||||||||||||| Sbjct 5743 GGAATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAAGACTC 5685 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || |||||||| ||||| || || || || ||||| Sbjct 5684 CACCTCAAGAGTGATAGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 5634 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || || |||||||| ||||| || || || Sbjct 6316 CCACCACGGAGGCGGAGCACCAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCTGCC 6257 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| || || || ||| | || | || ||||||||||| ||| Sbjct 6256 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 6197 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || || || || || |||| || | ||||||||||||||| || Sbjct 6196 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCGATGGTGTCGGAAGACTCCACC 6137 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || ||||| || | ||| || |||||||| ||||| Sbjct 6136 TCAAGGGTGATAGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 6090 >seq4493 Length=164055 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || ||||| || ||||| ||||| ||||| || || || Sbjct 95977 ATGCCTCCCCTGAGGCGGAGGACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCA 95918 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||| || || || || | || | || ||||||||||| Sbjct 95917 GCAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGG 95858 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || || || || |||| || | || | |||||| |||||||| Sbjct 95857 GGAATACCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCAGAAGACTC 95799 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || ||||| || ||||| || || || || ||||| Sbjct 95798 CACCTCGAGGGTGATAGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 95748 >seq891 Length=1582050 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || |||||||| || ||||| ||||| || || ||| | Sbjct 1149467 CCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 1149526 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | || || || ||| | || | || |||||||||||||| Sbjct 1149527 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 1149586 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || | || | || | |||||| || ||||| || Sbjct 1149587 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAGGACTCCAC 1149645 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || | || | || ||||| || || || || || || || |||||| Sbjct 1149646 CTCCAACGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATC 1149694 >seq192 Length=981986 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | ||| || ||||| || || ||||| ||||| ||||| ||| | Sbjct 849023 CCACCGCGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGCG 848964 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| || || || ||| | || | || |||||||||||||| Sbjct 848963 AGCGTTCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGG 848904 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || | || | || | |||||| || ||||| || Sbjct 848903 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 848845 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || || || || || || || || || || |||||| Sbjct 848844 CTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATC 848796 >seq4197 Length=262831 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || || || ||||| |||||||| ||||| Sbjct 76821 CCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAATCCGCA 76762 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | || || || || | |||| || ||||||||||| || Sbjct 76761 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGG 76702 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || ||||| || || || | || | || | ||||| || ||||| || Sbjct 76701 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCA-CGTTGTCAATTGTGTCAGACGACTCAAC 76643 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||||||||||| | || || ||||| || |||||| Sbjct 76642 CTCCAGGGTGATTGTTTTGCCGGTCAAGGTCTTCACAAAGATCTGCATC 76594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451977650519120