Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq4204 634 7e-177 seq3130 439 3e-118 seq3676 351 1e-91 seq4136 190 3e-43 seq203 187 3e-42 seq4428 145 9e-30 seq2035 113 6e-20 >seq4204 Length=279751 Score = 634 bits (702), Expect = 7e-177 Identities = 733/988 (74%), Gaps = 17/988 (2%) Strand=Plus/Plus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct 215777 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 215836 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653 | ||||||||||| | || ||||| || || | || |||||||| | ||||| | Sbjct 215837 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAAGTAC 215896 Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713 || |||||||| ||||| ||||| |||||||| ||||| || |||| ||| | |||||| Sbjct 215897 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 215956 Query 7714 GAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTT 7773 |||||| || || || || ||||| || || | ||||||||| | ||||| |||||||| Sbjct 215957 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 216016 Query 7774 GAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTA 7833 || ||| ||||||||||| | || |||||||| || ||||| || || || || || Sbjct 216017 AAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATA 216076 Query 7834 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTC 7893 |||||||| |||||||| || | ||||| | || || ||| ||||||||||| Sbjct 216077 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTC 216136 Query 7894 ACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAA 7953 | | || | ||||||||| | ||||||||||| |||||||| || ||||| || || Sbjct 216137 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 216196 Query 7954 GACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 8013 |||||||| || || | |||||| || || ||||| ||||||||||||||||| ||||| Sbjct 216197 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAA 216256 Query 8014 GACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACC 8073 |||| ||| ||||||| |||||||| || || | ||||||| | ||||||||| || Sbjct 216257 TACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCC 216316 Query 8074 TTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGC 8133 |||||| | |||||| | | ||| |||||| | ||| | ||||| Sbjct 216317 TTGACCAATAGGATAAATCAAGAAAACAGCA---------------GTAGCTAAATATGC 216361 Query 8134 TACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193 ||| ||||| ||||||||||| |||||| || |||||||||||||||||||| || Sbjct 216362 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATA 216421 Query 8194 TGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAG 8253 | | ||| | | |||||| | | || || | |||| || || ||||| | Sbjct 216422 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTGTATAA 216481 Query 8254 CCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGA 8313 ||||||||||| ||| || |||||||| || || || ||||| | || || || ||| Sbjct 216482 CCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGA 216541 Query 8314 AGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGG 8373 || ||||| || ||||||||||| || ||||| ||||| | | |||| || || || Sbjct 216542 AGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACTAGAAACAGG 216601 Query 8374 TTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAA 8432 ||||| || || ||||| || || |||| || | || ||| |||| || || ||| | Sbjct 216602 CTCACGAATACCATCAATATCTACTAGAGGGGCTGTGATGAAGGCGATAATAAATACAGA 216661 Query 8433 TAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGAT 8492 || |||| | | ||||| ||||||| ||||||||||| |||| || ||||| | Sbjct 216662 -AGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGT 216720 Query 8493 TGTTGGTGGAGGTTACCCAGTTACAGAA 8520 | | |||| |||| |||||| ||||| Sbjct 216721 TTTCGGTGCTAGTTATCCAGTTGCAGAA 216748 >seq3130 Length=1765 Score = 439 bits (486), Expect = 3e-118 Identities = 523/706 (74%), Gaps = 4/706 (1%) Strand=Plus/Plus Query 7811 CCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTC 7870 || ||||| || || || || | |||||||| |||||||| || | ||||||| || Sbjct 656 CCATGAGCGGCCACAATATT--AAGTCTCTTCCTCTTGACCAAATCTGTAACCATCATTA 713 Query 7871 TGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATC 7930 || ||| ||||||||||| | | || | ||||||||| | |||||||| || Sbjct 714 GCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGTATA 773 Query 7931 GCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATC 7990 |||||||| || |||||||| || |||||||| || || | |||||| || || ||||| Sbjct 774 GCACTGAATAGGGAACCACCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATA 833 Query 7991 AGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGA 8050 ||||||||||||||||| ||||| |||| ||| ||||||| |||||||| || || | | Sbjct 834 AGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAA 893 Query 8051 GGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCT 8110 |||||| | ||||||||| |||||||| | |||||| | | ||| ||||||| || Sbjct 894 GGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTAGCA 953 Query 8111 GCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAA 8170 || ||||| ||||| || ||||| ||| ||||| ||||||||||| |||||| || Sbjct 954 GCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTC 1013 Query 8171 AGTTCCCACTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGT 8230 |||||||||||||||||||| || | | ||| | | |||||| | | || || Sbjct 1014 AGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGC 1073 Query 8231 TGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAG 8290 | |||| || || ||||| | ||||||||||| ||| || |||||||| || || || Sbjct 1074 TCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAA 1133 Query 8291 AAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCA 8350 ||||| | || || || ||||| ||||| || ||||||||||| || ||||| ||| Sbjct 1134 AAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCA 1193 Query 8351 TACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCG 8410 || | | ||||||| || || ||||| || || ||||| || || ||||| || ||| Sbjct 1194 TAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTGCG 1253 Query 8411 ACGAAAGCGACGATGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACC 8469 | ||| |||| || || ||| | || |||| | | ||||| ||||||| ||||| Sbjct 1254 ATGAAGGCGATAATAAATACAGA-AGTTGCAGTCAATAAGGTAGGGATCATCAAAACACC 1312 Query 8470 GAACCAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTA 8515 |||||| |||| || ||||| || | |||| |||| || |||| Sbjct 1313 GAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCGGTTA 1358 >seq3676 Length=461187 Score = 351 bits (388), Expect = 1e-91 Identities = 441/603 (73%), Gaps = 7/603 (1%) Strand=Plus/Minus Query 7919 GAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGG 7978 ||||||||||| |||||||| || ||||| ||||| |||| || || | |||| | Sbjct 288785 GAACCATGCATAGCACTGAATAGGGAACCGCCAAA-----CAGCTACACCTAACATGCGA 288731 Query 7979 AAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCA 8038 || || ||||| ||||||||||||||| | ||||| |||| ||| ||||||| |||||| Sbjct 288730 AATGGATGCATAAGGATGTTGTGCTCTACCTGGAATACAATCATAAAGTTGAAAGTACCA 288671 Query 8039 GAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAAT 8098 || || || | ||||||| | ||||||||| |||||||| | |||||| | | ||| Sbjct 288670 GATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAA 288611 Query 8099 ACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCT 8158 ||||||| || | ||||| ||||| || ||||| ||| ||||| ||||||||||| Sbjct 288610 ACAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCC 288551 Query 8159 AGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGG 8218 |||||| || |||||||||||||||||||| || | | ||| | | |||||| Sbjct 288550 AGACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGT 288491 Query 8219 AAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCC 8278 | | || || | |||| || || ||||| | ||||||||||| ||| || |||||| Sbjct 288490 AGAACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCC 288431 Query 8279 CAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATG 8338 || || || || ||||| | || || || ||||| ||||| || ||||||||||| Sbjct 288430 CAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATA 288371 Query 8339 ATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACA 8398 || ||||| ||||| | | ||| | || || ||||| || || ||||| || || Sbjct 288370 ATATTGTTTCCATAAAGTAAAGAATCGAAAACAGGCTCACGAATACCATCAATATCTACT 288311 Query 8399 GGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAAT 8457 ||||| || |||| ||| |||| || || ||| | || |||| | | ||||| || Sbjct 288310 GGAGGGGCTGCGATGAAGGCGATAATAAATACAGA-AGTTGCAGTTAATAAGGTAGGGAT 288252 Query 8458 CATCAGGACACCGAACCAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACA 8517 ||||| ||| || |||| |||| || ||||| || | |||| ||| |||||| || Sbjct 288251 CATCAAAACATCGGACCATCCGATGTAAAGACGGTTTTCGGTGCTATTTATCCAGTTGCA 288192 Query 8518 GAA 8520 ||| Sbjct 288191 GAA 288189 >seq4136 Length=310402 Score = 190 bits (210), Expect = 3e-43 Identities = 191/247 (77%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 7613 TCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTGAAA 7672 || ||||| || || | || |||||||| | ||||| | || |||||||| ||||| Sbjct 3032 TCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTGAAT 3091 Query 7673 CCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACAACT 7732 ||||| |||||||| ||||| || |||| ||| | |||||||||||| || || || || Sbjct 3092 CCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACA 3151 Query 7733 GGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAG 7792 ||||| || || | ||||||||| | ||||| |||||||| || ||| ||||||||| Sbjct 3152 GGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAG 3211 Query 7793 ATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCG 7852 || | || |||||||| || ||||| || || || || || |||||||| |||||||| Sbjct 3212 ATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATAAGTCTCTTCCTCTTGACCA 3271 Query 7853 AA-CTTA 7858 || |||| Sbjct 3272 AATCTTA 3278 >seq203 Length=971741 Score = 187 bits (206), Expect = 3e-42 Identities = 160/198 (81%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct 778020 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 777961 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653 | ||||||||||| | || ||||| || || | || |||||||| | ||||| | Sbjct 777960 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 777901 Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713 || |||||||| ||||| ||||| |||||||| ||||| || |||| ||| | |||||| Sbjct 777900 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 777841 Query 7714 GAACCAGATGCCAACAAC 7731 |||||| || || || || Sbjct 777840 GAACCAAATCCCTACTAC 777823 >seq4428 Length=185154 Score = 145 bits (160), Expect = 9e-30 Identities = 140/180 (78%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 7883 TCAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGA 7942 ||||||||||| | | || | ||||||||| | |||||||||| |||||||| || Sbjct 19520 TCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCAAAGCACTGAATAGG 19579 Query 7943 GAACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGC 8002 ||||| || || |||||||| || || | |||||| || | ||||| |||||||||| | Sbjct 19580 GAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGAATGCATAAGGATGTTGTAC 19639 Query 8003 TCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCA 8062 ||||| ||||| |||| ||| ||||||| |||||||| || | | ||||||| | ||| Sbjct 19640 TCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTTCTAAAGGCATACCATCA 19699 >seq2035 Length=9416 Score = 113 bits (124), Expect = 6e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 6346 ACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTCTCGAACTCTGGATCCTCCGCTGC 6405 ||| ||||| || | || || ||||| ||||| ||||| || || ||||| |||||||| Sbjct 3652 ACCCTCATTTAAAACAATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATCTTCCGCTGC 3711 Query 6406 TCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGGTTAAGTGCAAGACCAATAATACC 6465 | ||| || | |||||||||||||| || | ||||| || || || || | | || Sbjct 3712 ACGGATTTCCTAGGAAACAAAGTCATAGGCACGTAGGTTCAGAGCTAGGCCGACTACGCC 3771 Query 6466 AATGCTAGAGGTCCAAAGACCCATAACAGGAACAAACAGCATAAAGAAATGTAGCCAACG 6525 ||| | |||| | ||| | || || ||||| ||||||||||||| || |||||| Sbjct 3772 AATAGCACTCATCCATAAACCGGTGACGGGTACAAATAGCATAAAGAAATATAACCAACG 3831 Query 6526 CTTATTG 6532 |||||| Sbjct 3832 TTTATTG 3838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622089634395680