Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq603 136 5e-27 seq4 136 5e-27 seq447 125 9e-24 >seq603 Length=994148 Score = 136 bits (150), Expect = 5e-27 Identities = 308/453 (68%), Gaps = 10/453 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| |||||||||||||| || ||||| || | ||| ||| |||||| Sbjct 841489 GTAGTCGCCGACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 841548 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 127349 | || || ||||| | ||| | || | | ||| || | || ||||| | Sbjct 841549 CCAGTCGAAGGGGTTGGTGACGTTGTACATCTTCTTGCAGCCGAGCGCCATT-AGGAGGC 841607 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-GTTA 127408 | || | |||| |||| ||||||| ||| || |||||| |||| ||| | | Sbjct 841608 GGTCAGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGA 841667 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 | ||||| ||||| ||| ||| | |||| ||||| || ||||| ||||| || Sbjct 841668 CG-GGGAGAGCGTCGCAGACGAAGTTCCTCTCGATGTCGACGGCTTCGGCGACGATTGCA 841726 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGCAAAC 127525 | | | || | || | | ||| | | ||| | || ||| || || || Sbjct 841727 CGGACGCGGGCCTCGTCAAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CAG-GCGAAG 841783 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || ||| || |||||||| ||||||||||| || || |||||| || || |||||| Sbjct 841784 TCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 841843 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 || || |||||||| | |||||| || || || || || || ||||| ||||| ||||| Sbjct 841844 AGGCCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCCGAGAAAAAGATGCCCTCG 841903 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || ||||| || | ||| |||||||| ||| Sbjct 841904 ACGCAGGCGAAGGCGACTAGGCGCTCGGCGAAG 841936 >seq4 Length=1057841 Score = 136 bits (150), Expect = 5e-27 Identities = 313/458 (68%), Gaps = 20/458 (4%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 125087 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCAT 125146 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || || || || | ||| | || || ||| || || | | |||| Sbjct 125147 CCAGTCGAAGGGATTGGCGACGTTG---TACATCTTCTTG-CAGCCGAG-CGCCATGAGC 125201 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404 || || || | |||| |||| || |||| |||| | |||||| |||| ||| Sbjct 125202 AGGCGGTCGGCGACGAACTCGATATACTGGCTCATCAGGACTCCGTTCATGCCGACGAGA 125261 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || ||||||||||| ||| |||| || | || ||||| || || || ||||| Sbjct 125262 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTTTCGATGTCGACGGCGTCAACGACGAT 125320 Query 127465 GGCGTGAATA-GTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAG 127520 || | | | ||| | || | | ||| | | ||| | || ||| || | Sbjct 125321 CTCGCGGACGCGGGTCTCATCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CAT-G 125376 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 | || || ||| || |||||||| ||||||||||| || || |||||| ||||| | Sbjct 125377 CGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTAAGACCCG 125436 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640 ||||||| || |||||||| | ||| || || || || || ||||| ||||||||||| | Sbjct 125437 GCATGAGGCCGCGCTTCTTAAGCCAAAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGC 125496 Query 127641 CCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 |||| || || ||||| |||| || |||||||| ||| Sbjct 125497 CCTCGACGCAGGCGAAAGCAACGAGGCGCTCGGCGAAG 125534 >seq447 Length=1725674 Score = 125 bits (138), Expect = 9e-24 Identities = 259/382 (68%), Gaps = 10/382 (3%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 |||| || || ||||||||| | |||||||| || || || |||| || | ||| Sbjct 1583923 ACGGCGACCTGACGATCAAACCTCCCTGGGCGAAGAAGCGCTGCGTCCAGCACATCTGGC 1583982 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCG---AAGCCATCCATCTCA 12806 | ||| || || |||| |||| || || | ||| || || ||||||||||| Sbjct 1583983 CTGTTTGTTGCGGCGAGCACAATGACACCGCT---GTTCCCGGCAAATCCATCCATCTCC 1584039 Query 12807 GTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCAC 12864 |||||||| || |||||||| || || | |||||||| | | | | | || |||| Sbjct 1584040 GTCAAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCC--CCCTCCGAGTCCTGCAC 1584097 Query 12865 TGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCAC 12924 || ||| | |||||||| |||||||| |||||||| || || ||||| || | Sbjct 1584098 CACGCTGCCTCCCGACGGCATCAATTTCATCAATGAACACAATGCACGGCGCCTTGGCCT 1584157 Query 12925 GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAA 12984 ||| || || | ||| | || || || || ||||| || |||| ||| || | Sbjct 1584158 TGGCCTTCTCGAACAGATCCCTGACCCTGGACGCGCCCACACCGACGAACAGCTCGACGA 1584217 Query 12985 AATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGA 13044 | | || ||||| || || |||||| ||| || || || |||| ||| || || | Sbjct 1584218 ACTCGGAGGCGGCGCAGGAGAAGAAGGGCACGCCGGCCTCCCCAGCGACGGCACGCGCCA 1584277 Query 13045 GGAGGGTCTTCCCCGTCCCTGG 13066 | |||||||| || || || || Sbjct 1584278 GCAGGGTCTTGCCAGTTCCGGG 1584299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613472521505520