Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq603 170 3e-37 seq4 156 7e-33 >seq603 Length=994148 Score = 170 bits (188), Expect = 3e-37 Identities = 300/431 (70%), Gaps = 7/431 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| || ||||||||||||| || ||| || ||||| | |||| ||||| Sbjct 841504 CTTCTCGAAGAAATTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAGGGGTT 841563 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | |||| || |||| | ||||| ||| || | | ||| || || || || Sbjct 841564 GGTGACGTTGTACATCTTCTTGCAGCCGAGCGCCATTAGGAGGCGGTCAGCGACGAACTC 841623 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| |||||||| || || | Sbjct 841624 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGACGGGGAGAGCGTCGCA 841683 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 | || | | |||| || ||||| ||||||| || || ||| | || || | | Sbjct 841684 GACGAAGTTCCTCTCGATGTCGACGGCTTCGGCGACGAT-TGCACGGACGCGGGCCTCGT 841742 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||||| | | |||| | | |||||||| || |||||||||||||| |||| Sbjct 841743 CAAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGCAGGCCCT 841799 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||||| ||||||||| | | ||||||||||||||| |||||| |||| Sbjct 841800 CGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCACGCTTCTTGA 841859 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| |||| ||| | | | | |||||||| ||||| ||| || || || Sbjct 841860 GCCAGAAGATGG-CGCAGAAGGATCCCGAGAAAAAGATGCCCTCGACGCAGGCGAAGGCG 841918 Query 160067 ACGAGCCTCTC 160077 || || | ||| Sbjct 841919 ACTAGGCGCTC 841929 >seq4 Length=1057841 Score = 156 bits (172), Expect = 7e-33 Identities = 486/740 (66%), Gaps = 22/740 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| |||| || ||| || ||||| | |||| || || Sbjct 125102 CTTCTCGAAGAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAGGGATT 125161 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| | ||||| ||| |||| | ||| || || || || Sbjct 125162 GGCGACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 125221 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||| || | |||| | | | ||| || || | || ||||||||||| || | Sbjct 125222 GATATACTGGCTCATCAGGACTCCGTTCATGCCGACGAGAGCGACGGGGAGCGCGTCGCA 125281 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887 | |||||| | || || ||||| || || || |||| ||| ||| || | Sbjct 125282 GACGAACTCCCTTTCGATGTCGACGGCGTCAACGACGATCTCGCG-GACGCGGGTCTCAT 125340 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||||| | | |||| | | |||||||| || |||||||||||||| |||| Sbjct 125341 CGAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCATGCGAAGTCGCAGTGCAGGCCCT 125397 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||||| ||||||||| | | | || |||||||||| || ||| || | Sbjct 125398 CGTCGCGGGAGATGAGCTCGTTGGAGAAGGTAAGACCCGGCATGAGGCCGCGCTTCTTAA 125457 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 ||||||| |||| |||| ||| | | | | || ||||| ||||| ||| || || || Sbjct 125458 GCCAAAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAAGCA 125516 Query 160067 ACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| | ||| | || ||| | | | | | | |||| | ||||||| || || Sbjct 125517 ACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCAGCGCATGGCCCACTCGGC 125572 Query 160126 CTTCTTTGCGATGCACGGCATG--CG--CTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 | ||||| |||| ||| | || |||| |||| || | | ||||| ||| Sbjct 125573 C----TTGCGGCGCACAGCAGGGACGGTGTCGATGGCGCGGAAGAGACGGTCCTTCTCGA 125628 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 | || ||| || | | |||| ||||||||| || | ||| | ||| |||| Sbjct 125629 CGTCGTCGCGGATGTACGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATATTCTCGA 125688 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACC 160301 |||| ||||| || |||||| |||||| |||||| || |||||| Sbjct 125689 TGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCGGCGACCTGCACGTCGGACATGAACC 125748 Query 160302 TTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGA 160360 | ||| | || || | || | || || | ||| || ||||| || | |||||| Sbjct 125749 -TGGACGCGAGGTTCTCGAGCACGATGCCATCAGAGGCGGCGAAGAAGGCGAGCACGTGG 125807 Query 160361 GAGATGAAATGTCTCTCGTC 160380 |||||||| || | |||||| Sbjct 125808 GAGATGAAGTGCCGCTCGTC 125827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795110253852320