Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3785 98.7 4e-15 seq221 86.0 2e-11 >seq3785 Length=445553 Score = 98.7 bits (108), Expect = 4e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || ||||| ||||| |||||||||||||||||||| || || ||||| || ||||| Sbjct 253748 GCTGTGATTACAGTTCCAGCTTATTTCAATGATGCACAGCGCCAGGCAACCAAGGATGCT 253689 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||| |||| | |||| | | || || |||||||| || || |||||||| Sbjct 253688 GGTCGTATTTCTGGACTTGATGTCCAAAGGATCATAAATGAACCAACTGCTGCTGCTCTG 253629 Query 451442 GCATATGGA 451450 | |||||| Sbjct 253628 TCTTATGGA 253620 >seq221 Length=85341 Score = 86.0 bits (94), Expect = 2e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 219205 TTAATCCCAATTTATATGAGAATGGAAAAGTATGTCTTAGTCTATTAGGAACATGGACTG 219264 ||||||| |||||||||||| ||||||||| |||||||| || ||||| || ||| ||| Sbjct 72015 TTAATCCAAATTTATATGAGTGTGGAAAAGTCTGTCTTAGCCTGTTAGGCACCTGGGCTG 72074 Query 219265 GTTCAAATAGTGAAAAATGGAATTCTAAAACA-TCTACTATGCTTCAAGTAATAGTTTCT 219323 | | |||| || ||||| || | || || | |||||| || || || | || Sbjct 72075 GAAGTGGTTGTGAGAAGTGGAACTC-AGCTCATTCAAATATGCTACAGGTGCTAATCTCC 72133 Query 219324 ATTCAAAGTTTAATTTTAAATGAAGAACCATATTTTAATGAACCTGTATAT 219374 |||||| | | | || ||||| | ||||| || ||||| || | |||| Sbjct 72134 ATTCAAGCTCTTGTATTGAATGAGAAGCCATACTTCAATGAGCCAGGATAT 72184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975603930580376