Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4069 141 7e-28 seq4137 134 1e-25 seq1459 123 2e-22 seq4234 87.8 1e-11 seq492 87.8 1e-11 seq4346 86.0 5e-11 >seq4069 Length=334958 Score = 141 bits (156), Expect = 7e-28 Identities = 314/465 (68%), Gaps = 16/465 (3%) Strand=Plus/Minus Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGATAGT 517909 ||||| || ||| ||| || |||| ||||| || || || ||| ||||| || ||| Sbjct 7204 TCAATGCCCTCGTACAGGGAGTCAATCTCAATGGTGGTCTGGGCAGTGGAAGA-GAGAGT 7146 Query 517910 GCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--AT 517967 | | || || | ||||| |||||||| || || || | || ||| | ||| | Sbjct 7145 CCTC--TTCGCCCTCTCACAAGCTGTCCTCAGCCTCCGGAGAGCCCTTG--GGTTGCCAG 7090 Query 517968 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTAT 518027 | | || | || ||||||||||| || | |||| | | || | | || | Sbjct 7089 TGATGTCCTTCTTGCTCTTTCTCTTGAACTCCTGAACAAAGTGGTTGACCATTCTGTTGT 7030 Query 518028 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 518087 |||| || ||||| || | | || | || | || || | || | || | || | Sbjct 7029 CAAAGTCCTCACCACCAAGGTGGGTGTCACCAGCTGTGGCCTTGACCTCAAAGATCCCCT 6970 Query 518088 CTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 518147 | |||| | | ||||| |||||| ||| |||||||||| ||||| || || |||| Sbjct 6969 CCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCACCCAGGTCAAAGATCAGGACAT 6910 Query 518148 TCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201 || | || | ||| || || ||||||||||| |||| ||||||||||| | Sbjct 6909 TCTTCTCGCCAACACTGGAAGCCTTCTTGTCAAGACCATAGGCAATGGCAGCAGCAGTCG 6850 Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261 | ||||| || || | || |||||| |||||| |||| ||| ||||| || ||||| | Sbjct 6849 GCTCATTGATGATCCGCATAACATTGAGACCACCAATGACTCCAGCATCCTTGGTGGCCT 6790 Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 | || ||||| ||||| || ||||||||||| || | ||| |||| Sbjct 6789 GCCTCTGTGAGTCGTTGAAGTATGCAGGAACTGTGACAACAGCAT 6745 >seq4137 Length=326916 Score = 134 bits (148), Expect = 1e-25 Identities = 309/462 (67%), Gaps = 10/462 (2%) Strand=Plus/Plus Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912 ||||| || ||| ||| ||||||| ||||| || || || | | || || || | Sbjct 320361 TCAATGCCCTCGTACAGCGAATCAATCTCAATGGTTGTCTGGGCAGTGGAGGAGAGGGTC 320420 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCA 517970 | || || | || || |||||||| || || | | || | | | ||| | | Sbjct 320421 CTCTTCGCCCTCTCGCAAGCTGTCCTCAGCCTCCTCAGAGCCCTGG--GGTTGCCCGTGA 320478 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 |||| | || | |||||||| || |||| ||| | | || | || || |||| Sbjct 320479 TATCTTTCTTGTTCTTTCTCTTAAATTCTTGCACAAAGTGATTGACCATCCGGTTGTCAA 320538 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 |||||||||| || | | ||| | |||| || || | || | || | || |||| Sbjct 320539 AATCTTCACCACCAAGGTGAGTGTCACCTGCTGTGGCCTTGACCTCAAAGATGCCCTCTT 320598 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | | ||| | ||||| ||| ||||| || | ||||| || || |||||| Sbjct 320599 CAATGGTAAGAAGGGAGACATCGAAGGTACCACCTCCAAGGTCAAAGATGAGAACATTCT 320658 Query 518151 TTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 | || | ||| || || ||||||||||| |||| || || ||||| |||| Sbjct 320659 TCTCACCAACACTGGTGGCCTTCTTGTCAAGACCATATGCAATCGCCGCTGCAGTCGGTT 320718 Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264 |||| || || | || ||||||||||||||||| ||| ||||| || ||||| || | Sbjct 320719 CATTGATGATCCGCATGACATTAAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCC 320778 Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 | || || || || || || ||||||||||| | |||||||| Sbjct 320779 TCTGGGAGTCATTGAAGTAGGCAGGAACAGTGACAACGGCAT 320820 >seq1459 Length=692598 Score = 123 bits (136), Expect = 2e-22 Identities = 150/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGT- 518165 |||||| ||| |||||||||| ||||| || || |||||| | || | |||| Sbjct 379504 ACATCAAAGGTACCACCACCCAGGTCAAAGATCAGGACATTCTTCTCACCAACGCTGGTA 379563 Query 518166 ----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 | || ||||||||||| |||| || ||||||||||| ||||| || || | || | Sbjct 379564 GCCTTCTTGTCAAGACCATAGGCAATGGCTGCAGCAGTTGGCTCATTGATGATGCGCATA 379623 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 ||||| ||||||||||| ||| || || || ||||| || || ||||| ||||| || Sbjct 379624 ACATTGAGACCAGCAATGACTCCAGCGTCCTTGGTGGCCTGCCTCTGTGAGTCGTTGAAG 379683 Query 518282 TATGCAGGAACAGTAATAACGGC 518304 || ||||| ||||| | ||||| Sbjct 379684 TAGGCAGGGACAGTGACCACGGC 379706 Score = 120 bits (132), Expect = 2e-21 Identities = 149/203 (73%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGT- 518165 |||||| ||| |||||||||| ||||| || || |||||| | || | |||| Sbjct 240380 ACATCAAAGGTACCACCACCCAGGTCAAAGATCAGGACATTCTTCTCACCAACGCTGGTA 240321 Query 518166 ----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 | || ||||||||||| |||| || ||||||||||| ||||| || || | || Sbjct 240320 GCCTTCTTGTCAAGACCATAGGCAATGGCTGCAGCAGTTGGCTCATTGATGATGCGCATG 240261 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 ||||| ||||||||||| ||| || || || ||||| || || ||||| ||||| || Sbjct 240260 ACATTGAGACCAGCAATGACTCCAGCGTCCTTGGTGGCCTGCCTCTGTGAGTCGTTGAAG 240201 Query 518282 TATGCAGGAACAGTAATAACGGC 518304 || ||||| ||||| | ||||| Sbjct 240200 TAGGCAGGGACAGTGACCACGGC 240178 >seq4234 Length=244235 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 671660 GAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACT 671719 ||||||||||| || | |||| ||| | |||||| | ||| |||| ||| | |||||| Sbjct 219725 GAATTTTTCTTTCATGCTATGGGTGGTAGAGAAGGTCTGATTGATACCGCTGTGAAAACT 219666 Query 671720 GCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATCAAACAAGAA 671779 |||| ||||| ||||| || || |||||| || | |||||||||| | Sbjct 219665 TCTGAAACTGGATATATCCAGCGACGACTTGTGAAGGCTATGGAAGATATCATGGTGAAG 219606 Query 671780 TATGATGGTACAGTAAGAAAT 671800 ||||||||||| ||||||||| Sbjct 219605 TATGATGGTACTGTAAGAAAT 219585 >seq492 Length=908872 Score = 87.8 bits (96), Expect = 1e-11 Identities = 134/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| ||| || || |||| ||||| | ||| | || || |||| || | Sbjct 639655 ACATCAAAGGTACCGCCTCCCAAGTCAAAGACAAGAATTGTC---TCATTGTTTT---TC 639602 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || |||| |||||| |||| | ||||||||||| ||||| ||||| | | ||| | Sbjct 639601 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTTGGCTCATTTATAATGCGGAGAACTTCC 639542 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | || || || | || |||||||| || ||| ||| ||||| || || || ||||| Sbjct 639541 AATCCTGCTATACGCCCAGCATCTTTTGTTGCTGTTCTCTGTGAGTCATTGAAGTATGCC 639482 Query 518288 GGAACAGTAA 518297 |||||||||| Sbjct 639481 GGAACAGTAA 639472 >seq4346 Length=1110530 Score = 86.0 bits (94), Expect = 5e-11 Identities = 107/146 (73%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 518161 TTGGTTTT--TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 518218 ||| |||| | |||| |||||| |||| | ||||||||||| ||||| ||||| | Sbjct 474436 TTGTTTTTCCTCTCAAAACCATAAGCAAGGGATGCAGCAGTTGGCTCATTTATAATGCGG 474377 Query 518219 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 518278 | ||| | | || || || | ||| |||||||| || ||| || ||||| || || Sbjct 474376 AGAACTTCCAATCCTGCTATACGTCCAGCATCTTTTGTTGCTGTCCTCTGTGAGTCATTG 474317 Query 518279 AAATATGCAGGAACAGTAATAACGGC 518304 || ||||| |||||||||| ||| || Sbjct 474316 AAGTATGCTGGAACAGTAACAACTGC 474291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780598003464532