Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4 141 1e-28 seq603 136 5e-27 seq447 125 9e-24 seq4423 118 1e-21 seq4414 114 2e-20 seq3829 104 3e-17 seq3543 86.0 8e-12 >seq4 Length=1057841 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| | || || || || || ||||| ||||||||||| || ||||| Sbjct 125534 CTTCGCCGAGCGCCTCGTTGCTTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 125475 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||| |||||||| || |||||||| ||||| |||||||||||| Sbjct 125474 CTGCGCCATCTTTTGGCTTAAGAAGCGCGGCCTCATGCCGGGTCTTACCTTCTCCAACGA 125415 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 125414 GCTCATCTCCCGCGACGAGGGCCTGCAC 125387 >seq603 Length=994148 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| || |||| || || || || ||||| ||||| ||||| || ||||| Sbjct 841936 CTTCGCCGAGCGCCTAGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCGGGATCCTT 841877 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 841876 CTGCGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 841817 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 841816 GCTCATCTCCCGCGACGAGGGCCTGCAC 841789 >seq447 Length=1725674 Score = 125 bits (138), Expect = 9e-24 Identities = 259/381 (68%), Gaps = 16/381 (4%) Strand=Plus/Plus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 || || ||||||||| | ||||||||||| ||||| | || || | ||| | || Sbjct 1583928 GACCTGACGATCAAACCTCCCTGGGCGAAGAAGCGCTGCGTCCAGCACATCTGGCCTGTT 1583987 Query 15938 CGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAA 15995 |||||||||| |||| | ||| |||| | |||| ||||||||||| ||||| Sbjct 1583988 TGTTGCGGCGAGCACAATGACACCGCTGTTCCCGG--CAAATCCATCCATCTCCGTCAAG 1584045 Query 15996 AGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTT 16053 |||||||| || || || |||| |||||||| | | | | | || |||| || | Sbjct 1584046 AGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCC--CCCTCCGAGTCCTGCACCACGCT 1584103 Query 16054 GCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGA 16109 || | || ||||||||||| ||||||||||| || ||||| || ||| || || Sbjct 1584104 GCCTCCCGACGGCATCAATTTCATCAATGAACACAATGCACGGCGCCTTGGCCTTGGCCT 1584163 Query 16110 GCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAG 16169 | || || ||||||| || | ||||||||||| || |||| ||| || || Sbjct 1584164 TC----TCGAACAGATCCCTGACCCTGGACGCGCCCACACCGACGAACAGCTCGACGAAC 1584219 Query 16170 TTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 16229 | | ||||| || || |||||| || | || || || | ||| || || || Sbjct 1584220 TCGGAGGCGGCGCAGGAGAAGAAGGGCACGCCGGCCTCCCCAGCGACGGCACGCGCCAGC 1584279 Query 16230 AGAGTCTTACCCGTACCTGGC 16250 || ||||| || || || ||| Sbjct 1584280 AGGGTCTTGCCAGTTCCGGGC 1584300 >seq4423 Length=186807 Score = 118 bits (130), Expect = 1e-21 Identities = 252/370 (68%), Gaps = 16/370 (4%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| || || || | ||| | || ||| | ||||||| | | || || || || Sbjct 100488 TCAAAACGTCCAGGCCTAAGTAAAGCTGAATCCAAGATATCAGCCCTGTTGGTGGCAGCA 100429 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 | |||| || || || | ||||||||||||||||| |||| | |||||| | | Sbjct 100428 ACAACAATTATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAACTGGTTCAAA 100369 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCA-CTG-----CGTTGCTTTCCC 16061 || || |||| ||||||||| | ||||||| | ||| | |||| |||| Sbjct 100368 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCCCTTTGCCTTCCA 100315 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAA 16120 || |||||||| ||||||| || || ||||| || ||| | | | | ||| ||| Sbjct 100314 ACAGCATCAATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA 100255 Query 16121 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 ||||| || || || ||| || ||||| ||||||||||||||||| | | | | | Sbjct 100254 -AGATCACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAACTCAGAGCCTG- 100197 Query 16181 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 | |||| || || || ||| || ||| || ||||| || ||| || | |||||||| Sbjct 100196 ATATTGAGAAAAATGGCACACCAGCTTCTCCTGCAATAGCCTTGGCAAGCAAAGTCTTAC 100137 Query 16240 CCGTACCTGG 16249 | || || || Sbjct 100136 CGGTTCCAGG 100127 >seq4414 Length=189502 Score = 114 bits (126), Expect = 2e-20 Identities = 251/370 (68%), Gaps = 16/370 (4%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| || || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 71726 TCAAAACGTCCAGGTCTAAGTAAAGCTGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 71667 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 || |||| || || || | ||||||||||||||||| |||| | |||||| | | Sbjct 71666 ATAACAATTATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAACTGGTTCAAA 71607 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCA-CTG-----CGTTGCTTTCCC 16061 || || |||| ||||||||| | ||||||| | ||| | |||| |||| Sbjct 71606 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCCCTTTGCCTTCCA 71553 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAA 16120 || |||||||| ||||||| || || ||||| || ||| | | | | ||| ||| Sbjct 71552 ACAGCATCAATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA 71493 Query 16121 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 ||||| || || || ||| || ||||| ||||||||||||||||| | | | | | Sbjct 71492 -AGATCACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAACTCAGAGCCTG- 71435 Query 16181 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 | |||| || || || ||| || || |||||||| || ||| || | ||| |||| Sbjct 71434 ATATTGAGAAAAATGGCACACCAGCCTCTCCCGCAATAGCCTTGGCAAGCAAAGTTTTAC 71375 Query 16240 CCGTACCTGG 16249 | || || || Sbjct 71374 CAGTTCCAGG 71365 >seq3829 Length=445942 Score = 104 bits (114), Expect = 3e-17 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 || || ||||||||| | ||||| ||||| ||||| || || | ||| | || Sbjct 322185 GACCTGACGATCAAACCTCCCTGGCCGAAGAAGCGCTGAGTCCAGCACATCTGGCCTGTT 322244 Query 15938 CGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAA 15995 |||||||||| |||| | ||| |||| | |||| || |||||||| ||||| Sbjct 322245 TGTTGCGGCGAGCACAATGACACCACTGTTCCCGG--CAAATCCGTCCATCTCCGTCAAG 322302 Query 15996 AGCTGGTTAATAGTTTGTTCCCGTTCATCA-TTCGCTGGCATACCACCAGCACTGCGTTG 16054 ||||||||||| || || |||| |||||| ||| | | | | || || | || || Sbjct 322303 AGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCTGCGCCACGCTG 322361 Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 16096 | | || ||||||||||| ||||||||||| |||||||| || Sbjct 322362 CCTCCCGACGGCATCAATTTCATCAATGAACACGATGCACGG 322403 >seq3543 Length=1405827 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 23050 ACTTCCAGTTCCTATCGCAATTGAGACAACTCACAAAAGTTGTCATTGGTTCATCCGCAG 23109 ||||||||| | | |||||| | |||| ||||||||||||||||||| ||||| ||| Sbjct 443103 ACTTCCAGTGGTTGTTGCAATTCACACAAGTCACAAAAGTTGTCATTGGCTCATCAGCAC 443162 Query 23110 ACCGAGTTTGAAGTTGATAATAGGTTGTTTTC 23141 |||||| || || ||||| || ||||| ||| Sbjct 443163 TCCGAGTCTGCAGCTGATAGTAAGTTGTCTTC 443194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620707312535840