Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq447 114 2e-20 seq4 105 8e-18 seq603 102 1e-16 seq3829 96.9 4e-15 seq2113 87.8 2e-12 >seq447 Length=1725674 Score = 114 bits (126), Expect = 2e-20 Identities = 313/476 (66%), Gaps = 10/476 (2%) Strand=Plus/Plus Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558 || |||||| || | |||||||| || || || | || || | ||| | |||||| Sbjct 1583931 CTGACGATCAAACCTCCCTGGGCGAAGAAGCGCTGCGTCCAGCACATCTGGCCTGTTTGT 1583990 Query 11559 AGCGGCAATGACTACAATGCCAGTCTCATTGTCG---AAACCGTCCATTTCTGTGAGAAG 11615 ||||| || |||||| || || || || || ||||| || || | || Sbjct 1583991 TGCGGC---GAGCACAATGACACCGCTGTTCCCGGCAAATCCATCCATCTCCGTCAAGAG 1584047 Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCTTC 11673 ||||||||| ||||| || | |||||| || | | | | ||||| ||||| | Sbjct 1584048 CTGGTTGATGGTCTGCTCCCTCTCATCATTTCCC--CCTCCGAGTCCTGCACCACGCTGC 1584105 Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 | ||||| || ||||| ||||| ||||| || || ||||| ||||| |||| Sbjct 1584106 CTCCCGACGGCATCAATTTCATCAATGAACACAATGCACGGCGCCTTGGCCTTGGCCTTC 1584165 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 ||||| || || | || | ||| || ||||| ||||||| ||| ||||| | | | Sbjct 1584166 TCGAACAGATCCCTGACCCTGGACGCGCCCACACCGACGAACAGCTCGACGAACTCGGAG 1584225 Query 11794 GCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 || | || | |||||| || | ||| ||||||| ||| || || || || ||| Sbjct 1584226 GCGGCGCAGGAGAAGAAGGGCACGCCGGCCTCCCCAGCGACGGCACGCGCCAGCAGGGTC 1584285 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCA 11913 || || || || || | ||| | || ||| || |||||||||||| || | Sbjct 1584286 TTGCCAGTTCCGGGCGGGCCAACCAGCAGGCATCCCTTGGGGATCTTGGCCCCCAGCGCG 1584345 Query 11914 AAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 ||| || || |||||||||||||| || | ||||| || || |||||| Sbjct 1584346 GTGTACTTGTCGGGGTTCTTGAGGAAGTCGACGACCTCCTGCAGCTCGAGCTTGGC 1584401 >seq4 Length=1057841 Score = 105 bits (116), Expect = 8e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| ||| || |||||||| || Sbjct 125388 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTAAGACCCGGCATGAGGCCG 125447 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| |||||||||||||| || || || || |||||||||||||| || ||| Sbjct 125448 CGCTTCTTAAGCCAAAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 125507 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 |||||||| | || ||||| || || Sbjct 125508 GCGAAAGCAACGAGGCGCTCGGCGAA 125533 >seq603 Length=994148 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 841790 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCA 841849 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || ||| || || ||||||||||| || ||| Sbjct 841850 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCCGAGAAAAAGATGCCCTCGACGCAG 841909 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| ||| ||||| || || Sbjct 841910 GCGAAGGCGACTAGGCGCTCGGCGAA 841935 >seq3829 Length=445942 Score = 96.9 bits (106), Expect = 4e-15 Identities = 212/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC 11652 || |||||||| || || | |||||||| || ||||| || | |||||| || | Sbjct 322282 AATCCGTCCATCTCCGTCAAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCC--C 322339 Query 11653 ATACCA--CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710 | | | ||||| ||||| | | ||||| || ||||| ||||| ||||| ||||| | Sbjct 322340 CTCCGAGCCCTGCGCCACGCTGCCTCCCGACGGCATCAATTTCATCAATGAACACGATGC 322399 Query 11711 ACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTA 11770 |||| ||||| |||| ||||| || || | || | ||| || ||||| | Sbjct 322400 ACGGCGCCTTGGCCTTGGCCTTCTCGAACAGGTCCCTGACCCTGGACGCGCCCACACCGA 322459 Query 11771 CGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAG 11830 |||||| ||| ||||| | | || | || | ||| || || | ||| |||| Sbjct 322460 CGAACAGCTCGACGAACTCCGACGCGGCGCAGGAGAAGAACGGTACGCCGGCCTCCCCAG 322519 Query 11831 CGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCAC 11890 ||| ||| || || || || ||||| || || || || | ||| | || ||| || Sbjct 322520 CGACGGCACGCGCCAGCAGGGTCTTGCCAGTTCCGGGAGGGCCAACCAGCAGGCATCCCT 322579 Query 11891 GGGGGATCTTGGCACC 11906 |||||||||||| || Sbjct 322580 TGGGGATCTTGGCCCC 322595 >seq2113 Length=1451509 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 ||||| ||| ||||||| ||||| ||||| || |||||||||||||| || || || Sbjct 1174381 CGTCGACTGTATATGTTAGATGTGTAAGGTTCAAAGCACTCATTGTTGCCAAGAATCTGA 1174440 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||||||||| |||||||| ||||| | |||||| ||||| Sbjct 1174441 CTAGTGGAAGCAGTGGGCATTGGAGCAACAAGAAGAGAGTTTC 1174483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588942708131600