Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq447 129 7e-25 seq4 123 3e-23 seq4423 120 4e-22 seq4414 114 2e-20 seq603 114 2e-20 seq3829 98.7 1e-15 seq4413 86.0 7e-12 >seq447 Length=1725674 Score = 129 bits (142), Expect = 7e-25 Identities = 282/416 (68%), Gaps = 10/416 (2%) Strand=Plus/Plus Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244 || || ||||||||| | ||||| ||||| ||||| | || || | ||| | || Sbjct 1583928 GACCTGACGATCAAACCTCCCTGGGCGAAGAAGCGCTGCGTCCAGCACATCTGGCCTGTT 1583987 Query 9245 CGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9302 || ||||||| |||| | ||| |||| | |||| ||||||||||| ||||| Sbjct 1583988 TGTTGCGGCGAGCACAATGACACCGCTGTTCCCGG--CAAATCCATCCATCTCCGTCAAG 1584045 Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTT 9360 || ||||| || || || |||| |||||||| | | | | | || |||| || | Sbjct 1584046 AGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCC--CCTCCGAGTCCTGCACCACGCT 1584103 Query 9361 GCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGA 9420 || | || ||||||||||| ||||||||||| ||||| || || || | ||| Sbjct 1584104 GCCTCCCGACGGCATCAATTTCATCAATGAACACAATGCACGGCGCCTTGGCCTTGGCCT 1584163 Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480 | || || ||||| | ||||| ||||||||||| || |||| ||| || || | | Sbjct 1584164 TCTCGAACAGATCCCTGACCCTGGACGCGCCCACACCGACGAACAGCTCGACGAACTCGG 1584223 Query 9481 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540 ||||| || || |||||| || | || || || | ||| || || || || | Sbjct 1584224 AGGCGGCGCAGGAGAAGAAGGGCACGCCGGCCTCCCCAGCGACGGCACGCGCCAGCAGGG 1584283 Query 9541 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595 |||| || || || ||| || | || | |||| ||| | || |||||||| || Sbjct 1584284 TCTTGCCAGTTCCGGGCGGGCCAACCAGCA-GGCATCCCTTGGGGATCTTGGCCCC 1584338 >seq4 Length=1057841 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 125387 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTAAGACCCGGCATGAGGCC 125446 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | |||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 125447 GCGCTTCTTAAGCCAAAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 125506 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || |||| ||||||||||||||| Sbjct 125507 GGCGAAAGCAACGAGGCGCTCGGCGAAG 125534 >seq4423 Length=186807 Score = 120 bits (132), Expect = 4e-22 Identities = 250/369 (68%), Gaps = 14/369 (4%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| || || || | ||| | || ||| | ||||||| | | || || || || Sbjct 100488 TCAAAACGTCCAGGCCTAAGTAAAGCTGAATCCAAGATATCAGCCCTGTTGGTGGCAGCA 100429 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 | |||| || || || | ||||||||||||||||| |||| | ||||| | | Sbjct 100428 ACAACAATTATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAACTGGTTCAAA 100369 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCAC-TG-----CGTTGCTTTCCC 9368 || || |||| ||||||||| | ||||||| || || | |||| |||| Sbjct 100368 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCCCTTTGCCTTCCA 100315 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || |||||||| ||||||| || || || || || ||| || ||| | | || Sbjct 100314 ACAGCATCAATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA 100255 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| ||||||| ||| || ||||| ||||||||||||||||| | | | | | | Sbjct 100254 AGATCACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAACTCAGAGCCTG-A 100196 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 |||| || || || ||| || ||| || ||||| || ||| || | ||||||||| Sbjct 100195 TATTGAGAAAAATGGCACACCAGCTTCTCCTGCAATAGCCTTGGCAAGCAAAGTCTTACC 100136 Query 9548 CGTACCTGG 9556 || || || Sbjct 100135 GGTTCCAGG 100127 >seq4414 Length=189502 Score = 114 bits (126), Expect = 2e-20 Identities = 249/369 (67%), Gaps = 14/369 (4%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| || || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 71726 TCAAAACGTCCAGGTCTAAGTAAAGCTGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 71667 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 || |||| || || || | ||||||||||||||||| |||| | ||||| | | Sbjct 71666 ATAACAATTATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAACTGGTTCAAA 71607 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCAC-TG-----CGTTGCTTTCCC 9368 || || |||| ||||||||| | ||||||| || || | |||| |||| Sbjct 71606 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCCCTTTGCCTTCCA 71553 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || |||||||| ||||||| || || || || || ||| || ||| | | || Sbjct 71552 ACAGCATCAATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA 71493 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| ||||||| ||| || ||||| ||||||||||||||||| | | | | | | Sbjct 71492 AGATCACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAACTCAGAGCCTG-A 71434 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 |||| || || || ||| || || |||||||| || ||| || | ||| ||||| Sbjct 71433 TATTGAGAAAAATGGCACACCAGCCTCTCCCGCAATAGCCTTGGCAAGCAAAGTTTTACC 71374 Query 9548 CGTACCTGG 9556 || || || Sbjct 71373 AGTTCCAGG 71365 >seq603 Length=994148 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 841789 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 841848 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || || ||||| ||||| ||||| || || Sbjct 841849 ACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCCGAGAAAAAGATGCCCTCGACGCA 841908 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | ||||||||||||||| Sbjct 841909 GGCGAAGGCGACTAGGCGCTCGGCGAAG 841936 >seq3829 Length=445942 Score = 98.7 bits (108), Expect = 1e-15 Identities = 275/415 (66%), Gaps = 8/415 (2%) Strand=Plus/Plus Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244 || || ||||||||| | ||||| ||||| ||||| || || | ||| | || Sbjct 322185 GACCTGACGATCAAACCTCCCTGGCCGAAGAAGCGCTGAGTCCAGCACATCTGGCCTGTT 322244 Query 9245 CGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9302 || ||||||| |||| | ||| |||| | |||| || |||||||| ||||| Sbjct 322245 TGTTGCGGCGAGCACAATGACACCACTGTTCCCGG--CAAATCCGTCCATCTCCGTCAAG 322302 Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTG 9361 || |||||||| || || |||| |||||||| | | | | | || || | || || Sbjct 322303 AGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCTGCGCCACGCTG 322361 Query 9362 CTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 9421 | | || ||||||||||| ||||||||||| || || || || || | ||| | Sbjct 322362 CCTCCCGACGGCATCAATTTCATCAATGAACACGATGCACGGCGCCTTGGCCTTGGCCTT 322421 Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481 || || || || | ||||| ||||||||||| || |||| ||| || || | | Sbjct 322422 CTCGAACAGGTCCCTGACCCTGGACGCGCCCACACCGACGAACAGCTCGACGAACTCCGA 322481 Query 9482 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9541 |||| || || ||| || || | || || || | ||| || || || || || Sbjct 322482 CGCGGCGCAGGAGAAGAACGGTACGCCGGCCTCCCCAGCGACGGCACGCGCCAGCAGGGT 322541 Query 9542 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595 ||| || || || || || | || | |||| ||| | || |||||||| || Sbjct 322542 CTTGCCAGTTCCGGGAGGGCCAACCAGCA-GGCATCCCTTGGGGATCTTGGCCCC 322595 >seq4413 Length=1061291 Score = 86.0 bits (94), Expect = 7e-12 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || ||||||||||| |||||||||| ||| ||| | ||| | || Sbjct 3841 TGAGGCCTTGGAGTGCCAGCATTGAAAAGGGTTGGTGATGCATGAGTAAACCAGCGCTGA 3782 Query 107228 GACATCTTGTCGTATG-TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| ||| ||||| ||| || |||| ||||| || ||| ||| || || |||| Sbjct 3781 GACATCATGTGGTATGTTCTGATAG-CAGACTCAATATCATCCTTGTGAATCCCAATGGA 3723 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGA 107344 || | ||| | ||| | || ||| |||||| | | ||| | | | || | ||| Sbjct 3722 AACTCTCATTAGCATATGCTGTGGTCTTTCCACAACCTTTCCACCAA--CTTTCAACAGA 3665 Query 107345 T-AGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 | || || |||||||||| || | |||||| || Sbjct 3664 TAAGATC-TCTCAAGGGTCTTAAAACCAAAATA 3633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589947451335280