Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq4204 434 1e-116 seq3130 331 1e-85 seq3676 275 7e-69 seq4136 127 2e-24 seq4428 118 1e-21 seq2635 86.0 7e-12 seq692 86.0 7e-12 seq2035 84.2 3e-11 >seq4204 Length=279751 Score = 434 bits (480), Expect = 1e-116 Identities = 664/943 (70%), Gaps = 19/943 (2%) Strand=Plus/Minus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGT 169502 || ||||| |||||| | ||||| || |||| | || ||| | | ||| || || | Sbjct 216706 GGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTC-TGTATTTATTAT 216648 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 || ||||| |||| |||| || ||||| || || || | || || || | |||| Sbjct 216647 CGCCTTCATCACAGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTC 216588 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 ||| | ||||| ||||| || ||||||||||| || |||| | || || ||||| Sbjct 216587 TTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGG 216528 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 | | ||||| |||||||| |||||||| ||| |||||||||| ||||| || ||||| || Sbjct 216527 ATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGG 216468 Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACA 169742 |||||| || | | | | |||||| | ||||| | | || ||||| | | Sbjct 216467 CCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 216408 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 ||||||||| | | | | || |||||||||||||| ||||||||| | Sbjct 216407 GTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT------- 216355 Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGA 169862 || || || ||||| ||||| | || || ||||||| || |||||||| Sbjct 216354 --TAGCTACT------GCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGA 216303 Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922 ||||||||| |||| || || |||||||||||||||||| | || ||||| |||||||| Sbjct 216302 TGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCA 216243 Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTT 169982 ||||| || |||||||| || |||||| ||| ||||| || | ||||| || || | Sbjct 216242 CAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCT 216183 Query 169983 ATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCA 170042 |||| || ||||||||||| | || || || | | ||||| ||||| || || | Sbjct 216182 ATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAA 216123 Query 170043 AGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGC 170102 || || || | ||||| | || || ||||| ||||| || || || || || || Sbjct 216122 TGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGC 216063 Query 170103 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAG 170162 || || ||||||||||| || | |||||||| |||||| || |||||||| | Sbjct 216062 CGCTCATGGTTACTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTC 216003 Query 170163 TCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTAT 170222 | ||||||||||| | || | || ||||| ||| | | ||||| || || | ||||| Sbjct 216002 TTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTAT 215943 Query 170223 CTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT-GCTA 170281 | || ||||| |||||| | || || ||||| || |||||||| || ||||| || | Sbjct 215942 TAGTACTATGGCTTTCAACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCA 215883 Query 170282 ACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAG 170341 | || | | || |||| |||| | | ||| | || || | |||||||||| Sbjct 215882 A-GGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAG 215824 Query 170342 TTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 | ||||| ||| | ||||| ||||||||||| ||||||||||| Sbjct 215823 TAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 215781 >seq3130 Length=1765 Score = 331 bits (366), Expect = 1e-85 Identities = 478/671 (71%), Gaps = 4/671 (1%) Strand=Plus/Minus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGT 169502 || ||||| |||||| | ||||| || |||| | || ||| | | ||| || || | Sbjct 1321 GGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTC-TGTATTTATTAT 1263 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 || ||||| ||||| ||||| || ||||| || || || | || || || | ||||| Sbjct 1262 CGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTC 1203 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 ||| | ||||| ||||| || ||||||||||| || |||| | || || ||||| Sbjct 1202 TTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGG 1143 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 | | ||||| |||||||| |||||||| ||| |||||||||| ||||| || ||||| || Sbjct 1142 ATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGG 1083 Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACA 169742 |||||| || | | | | |||||| | ||||| | | || ||||| | | Sbjct 1082 CCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 1023 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 ||||||||| | | | | || |||||||||||||| ||||||||| || || || Sbjct 1022 GTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 963 Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGA 169862 || | ||||| ||||| ||||| | || || ||||||| || |||||||| Sbjct 962 TGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGA 903 Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922 ||||||||| |||| || || |||||||||||||||||| | || ||||| |||||||| Sbjct 902 TGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCA 843 Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTT 169982 ||||| || |||||||| || |||||| ||| ||||| || | ||||| || || | Sbjct 842 CAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGTGGTTCCCT 783 Query 169983 ATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCA 170042 |||| || || |||||||| | || || || | | ||||| ||||| || || | Sbjct 782 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAA 723 Query 170043 AGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGC 170102 || || || ||||||| | || || ||||| ||||| || | || || || || Sbjct 722 TGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGGAAGAGACTT--AATATTGTGGC 665 Query 170103 AGCACACGGTT 170113 || || |||| Sbjct 664 CGCTCATGGTT 654 >seq3676 Length=461187 Score = 275 bits (304), Expect = 7e-69 Identities = 399/561 (71%), Gaps = 7/561 (1%) Strand=Plus/Plus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGT 169502 || |||| | |||| | ||||| || |||| | || ||| | | ||| || || | Sbjct 288231 GGATGGTCCGATGTTTTGATGATCCCTACCTTATTAACTGCAACTTC-TGTATTTATTAT 288289 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 || ||||| ||||| ||||| || ||||| || || || | || || || | ||| Sbjct 288290 CGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTC 288349 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 ||| | ||||| ||||| || ||||||||||| || |||| | || || ||||| Sbjct 288350 TTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGG 288409 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 | | ||||| |||||||| |||||||| ||| |||||||||| ||||| || ||||| || Sbjct 288410 ATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGG 288469 Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACA 169742 |||||| || | | | | |||||| | ||||| | | || ||||| | | Sbjct 288470 CCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 288529 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 ||||||||| | | | | || |||||||||||||| ||||||||| || || || Sbjct 288530 GTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 288589 Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGA 169862 || | | ||| ||||| ||||| | || || ||||||| || |||||||| Sbjct 288590 TGTTGCAGTTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGA 288649 Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922 ||||||||| |||| || || |||||||||||||||||| | || ||||| | |||||| Sbjct 288650 TGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCA 288709 Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTT 169982 ||||| || |||||||| || | |||| ||| ||||| |||| || || || | Sbjct 288710 CAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGC-----TGTTTGGCGGTTCCCT 288764 Query 169983 ATTCTCAGCAATGCATGGTTC 170003 |||| || ||||||||||| Sbjct 288765 ATTCAGTGCTATGCATGGTTC 288785 >seq4136 Length=310402 Score = 127 bits (140), Expect = 2e-24 Identities = 158/215 (73%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 170064 TAAG-TTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTC 170122 |||| || || ||||| ||||| || || || || || || || || ||||||||||| | Sbjct 3278 TAAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCC 3219 Query 170123 GTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAG 170182 | | |||||||| |||||| || |||||||| | | ||||||||||| | || | Sbjct 3218 GATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTG 3159 Query 170183 TTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACT 170242 || ||||| ||| | | ||||| || || | ||||| | || ||||| |||||| Sbjct 3158 CTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 3099 Query 170243 TGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT 170277 | || || ||||| || |||||||| || |||||| Sbjct 3098 TAAACGGATTCAATTTCAACCAATCTGTAGTTGAT 3064 >seq4428 Length=185154 Score = 118 bits (130), Expect = 1e-21 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 169860 TGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGA 169919 |||||||||||| ||| || || |||||||||||||||||| | || ||||| ||||| Sbjct 19699 TGATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 19640 Query 169920 GCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATC 169979 | | ||||| || |||||| | || |||||| ||| ||||| || | ||||| || || Sbjct 19639 GTACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTC 19580 Query 169980 TTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGA 170039 ||||| || |||||||||| | || || || | | ||||| ||||| || || Sbjct 19579 CCTATTCAGTGCTTTGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGA 19520 >seq2635 Length=570798 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| |||||||| || || || ||| | || || ||||| |||||||||||||| || || Sbjct 375360 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTTTGTATTCCACATGGTGGAGG 375419 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||||||| | |||||||| ||||| Sbjct 375420 TGGTCCTGGCATGGGTCCTATTGGTGT 375446 >seq692 Length=852161 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| |||||||| || || || ||| | || || ||||| || ||||||||||| || || Sbjct 267375 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTTTGCATTCCACATGGTGGAGG 267434 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTTGTA 155129 ||||||||| | |||||||| ||||| ||| || || | |||||| || Sbjct 267435 TGGTCCTGGCATGGGTCCTATTGGTGTTAAAAAGCACCTGGCTCCATTTTTA 267486 >seq2035 Length=9416 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 171306 TTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATC 171365 ||| | ||| ||||| | || || || |||| ||| | |||| |||| || | Sbjct 3825 TTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTA 3766 Query 171366 GTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCA 171425 || || ||||| || ||||| | || || || ||||| || | || || | ||||| Sbjct 3765 GTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCCTAGGAAATCCGTGCAGCG 3706 Query 171426 GAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTAT 171481 ||||| || || || |||||||||||||| || ||||| || | ||||| ||||| Sbjct 3705 GAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTGTTTTAAATGAGGGTAT 3650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579180059996480