Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq4204 610 7e-170 seq3130 428 5e-115 seq3676 336 2e-87 seq4136 194 2e-44 seq203 152 6e-32 seq2035 129 7e-25 seq238 96.9 4e-15 seq4131 95.1 1e-14 >seq4204 Length=279751 Score = 610 bits (676), Expect = 7e-170 Identities = 730/989 (74%), Gaps = 19/989 (2%) Strand=Plus/Minus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| | ||| | ||| ||| | ||||| || || | || |||||||| ||| || Sbjct 216748 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 216689 Query 163845 ATGATCCCTACGCTGCTTG-CAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163902 ||||||||||| || ||| | ||||| ||||| || || |||||||| || | || | Sbjct 216688 ATGATCCCTAC-CTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCC 216631 Query 163903 CCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACA 163962 | | || || || |||||||||||||| |||||| | |||| | | ||||| |||| Sbjct 216630 CTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACA 216571 Query 163963 ACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCA 164022 | || ||||||||||| || |||| | || || || || | ||||| ||||| | Sbjct 216570 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 216511 Query 164023 TTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCG 164082 |||||||||| ||||| ||||||| ||| | ||||| || || |||| | || | | Sbjct 216510 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 216451 Query 164083 TCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACC 164142 | | |||||| | | ||| | | || ||||||||||||||||||||| || || Sbjct 216450 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 216391 Query 164143 GTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCG 164202 |||| |||||||||||||||||| |||||| || | ||| | | Sbjct 216390 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTT---------------AGCTACTG 216346 Query 164203 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCA 164262 | || ||| || | |||||| | |||||||| |||||||| | ||||| | || | Sbjct 216345 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 216286 Query 164263 TCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACC 164322 | ||||| || ||||||| ||| | || ||||| ||||||||||||||||| ||||| | Sbjct 216285 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATC 216226 Query 164323 CCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164382 | || || ||| | || || ||||| ||||| |||||||| || |||||||| ||||| | Sbjct 216225 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 216166 Query 164383 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATG 164442 |||| |||| || ||| || | | |||||||| |||| ||| || || | | Sbjct 216165 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGG 216106 Query 164443 GTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTG 164502 |||||| ||||||||||| ||||| || || || ||||| |||||||| |||||||||| Sbjct 216105 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTG 216046 Query 164503 GTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 164562 | || | ||||||||||| ||| || |||||||| ||||| || ||||||||| | | Sbjct 216045 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 215986 Query 164563 CTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCA 164622 |||| |||||||| || || || |||||||| || | ||| || || ||||| |||| Sbjct 215985 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 215926 Query 164623 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164682 |||| ||||| ||||| |||||||| || | | ||| | || ||||| || | || | Sbjct 215925 ACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATA 215866 Query 164683 CTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACG 164742 ||||||| || | ||||||| ||| ||| ||||||||||| |||||||| ||||| | Sbjct 215865 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 215806 Query 164743 CTCACAACTTCCCTCTGGATCTCGCTGCT 164771 |||||||||||||||| || || |||||| Sbjct 215805 CTCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 428 bits (474), Expect = 5e-115 Identities = 511/687 (74%), Gaps = 6/687 (1%) Strand=Plus/Minus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAAC 163870 ||||| || || | || |||||||| ||| ||||||||||||| || ||| | ||||| Sbjct 1336 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTAC-CTTATTGACTGCAAC 1278 Query 163871 CATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTG 163929 ||||| || || |||||||| |||| || || || || || || ||||||||||||| Sbjct 1277 T-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTG 1219 Query 163930 AACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCT 163989 | |||||| | ||||| | | ||||| ||||| || ||||||||||| || |||| Sbjct 1218 AGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTA 1159 Query 163990 CGTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAAT 164049 | || || || || | ||||| ||||| ||||||||||| ||||| ||||||| | Sbjct 1158 CTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGT 1099 Query 164050 GGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATG 164109 || | ||||| || || |||| | || | || | |||||| | | ||| | | Sbjct 1098 GGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTT 1039 Query 164110 CATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTG 164169 || ||||||||||||||||||||| || |||||| |||||||||||||||||| || Sbjct 1038 GTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTG 979 Query 164170 TTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTC 164229 |||| || || || || |||||||| || | || || ||| || | |||||| | |||| Sbjct 978 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTC 919 Query 164230 AAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGG 164289 |||| |||||||| | ||||| | || || ||||| || ||||||| ||| | | Sbjct 918 AAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTG 859 Query 164290 TGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCG 164349 | ||||| ||||||||||||||||| ||||| || || || ||| | || || ||||| | Sbjct 858 TATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTG 799 Query 164350 TATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTC 164409 |||| || ||||| || |||||||| || || ||||| |||| || ||| || | Sbjct 798 TATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATCA 739 Query 164410 GTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAA 164469 | |||||||| |||| ||| || || ||||||||| ||||||||||| ||||| | Sbjct 738 GGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGGAAGAGA 679 Query 164470 CATACAACATTGTTGCCGCTCACGGTT 164496 | | || ||||| |||||||| |||| Sbjct 678 CTT--AATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 336 bits (372), Expect = 2e-87 Identities = 438/603 (73%), Gaps = 7/603 (1%) Strand=Plus/Plus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| | ||| | | | ||| | ||||| || || | || |||| || ||| || Sbjct 288189 TTCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTG 288248 Query 163845 ATGATCCCTACGCTGCTTGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163903 ||||||||||| | | | ||||| ||||| || || |||||||| |||| || || Sbjct 288249 ATGATCCCTACCTTATTAACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCC 288307 Query 163904 CCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAA 163963 || || || || |||||||||||||| |||||| | ||| | | ||||| ||||| Sbjct 288308 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAA 288367 Query 163964 CATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCAT 164023 || ||||||||||| || |||| | || || || || | ||||| ||||| || Sbjct 288368 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 288427 Query 164024 TTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGT 164083 ||||||||| ||||| ||||||| ||| | ||||| || || |||| | || | || Sbjct 288428 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 288487 Query 164084 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACCG 164143 | |||||| | | ||| | | || ||||||||||||||||||||| || ||| Sbjct 288488 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 288547 Query 164144 TCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGC 164203 ||| |||||||||||||||||| |||||| || || || || ||||||| || | || Sbjct 288548 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 288607 Query 164204 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCAT 164263 || ||| || | |||||| | |||||||| |||||||| | ||||| | || || Sbjct 288608 TGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 288667 Query 164264 CTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACCC 164323 ||||| || ||||||| ||| | || ||||| | ||||||||||||||| ||||| || Sbjct 288668 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATCC 288727 Query 164324 CTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164383 || | ||| | || || |||| ||||||||||| || |||||||| ||||| || Sbjct 288728 ATTTCGCATGTTAGGTGTAGCTG-----TTTGGCGGTTCCCTATTCAGTGCTATGCATGG 288782 Query 164384 TTC 164386 ||| Sbjct 288783 TTC 288785 >seq4136 Length=310402 Score = 194 bits (214), Expect = 2e-44 Identities = 188/242 (78%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 164451 TTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTG 164510 ||||||||||| ||||| || || || ||||| |||||||| ||||||||||| || | Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 164511 ATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGG 164570 ||||||||||| ||| || |||||||| ||||| || ||||||||| | ||||| ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 164571 CCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAAC 164630 ||||| || || || |||||||| || | ||| || || ||||| |||||||| ||| Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 164631 GGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCA 164690 || ||||| |||||||| || | | ||| | || ||||| || | || |||||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 164691 GA 164692 || Sbjct 3033 GA 3032 >seq203 Length=971741 Score = 152 bits (168), Expect = 6e-32 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 164573 TGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGG 164632 ||| || || || |||||||| || | ||| || || ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 164633 TTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGA 164692 ||||| |||||||| || | | ||| | || ||||| || | || |||||||| || Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 164693 CGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTT 164752 | ||||||| ||| ||| ||||||||||| |||||||| ||||| ||||||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 164753 CCCTCTGGATCTCGCTGCT 164771 |||||| || || |||||| Sbjct 778002 CCCTCTAGACCTAGCTGCT 778020 >seq2035 Length=9416 Score = 129 bits (142), Expect = 7e-25 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 165938 AATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGT 165997 ||||| | ||||| ||||||||||||| ||||| || || | ||| | |||| ||| Sbjct 3837 AATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGT 3778 Query 165998 TCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAG 166057 | || || | | || || ||||| ||||| ||||| ||||||||||| ||| | || Sbjct 3777 GCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCCTAGGAA 3718 Query 166058 ATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAAT 166117 ||| | ||||| ||||| || || ||||| || |||||||| ||||| ||| | || ||| Sbjct 3717 ATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTGTTTTAAAT 3658 Query 166118 GAAGGT 166123 || ||| Sbjct 3657 GAGGGT 3652 >seq238 Length=82349 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/134 (77%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 165242 GGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACT 165301 || |||||||| || | || ||||| ||||||| | ||| | || |||||| |||| Sbjct 49492 GGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACA 49433 Query 165302 GGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGG-AGGG 165360 ||||||||||| | || ||||||||| || || ||||| ||||||||| ||| ||| Sbjct 49432 GGGACTACTTTTGTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGT 49373 Query 165361 TGCAAACTTTCTTA 165374 ||||| ||||||| Sbjct 49372 TGCAA--TTTCTTA 49361 >seq4131 Length=315116 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 163998 GCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTAC 164057 || ||||| | ||||| |||| ||||||||||| |||| ||||||| ||| | ||| Sbjct 226348 GCGATTGGATTGCACTTTTACCTAATTTGGGAAGCTGCATATGTTGATGAGTGGTTATAC 226407 Query 164058 AACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGCATACATG 164117 || | || |||| | || | || | |||||| | | | | || | ||| Sbjct 226408 AATAGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTAGCT-----TG-TTGTATG 226461 Query 164118 GGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTA 164176 |||||||||||||||||| || | |||| |||||||||||||||||| |||||| || Sbjct 226462 GGTCGTGAGTGGGAACTGAGTTTCAGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATA 226520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556893319825680