Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq4204 423 2e-113 seq3130 300 2e-76 seq3676 248 1e-60 seq4136 140 4e-28 seq203 123 3e-23 seq4428 116 4e-21 seq2635 95.1 1e-14 seq692 95.1 1e-14 seq2035 86.0 7e-12 >seq4204 Length=279751 Score = 423 bits (468), Expect = 2e-113 Identities = 686/988 (69%), Gaps = 17/988 (2%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 |||||| | ||| |||| || | ||| | |||| | || ||||||||||| | Sbjct 216748 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 216689 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | || || | || ||||| |||| ||| Sbjct 216688 ATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATCGCCTTCATCACAGCCCCT 216629 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 | || ||||| || || || | || || ||| | ||||||| | ||||| ||||| Sbjct 216628 CTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAAT 216569 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || ||||||||||| || |||| | || || || || | ||||| ||||| || Sbjct 216568 ATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATT 216509 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| ||| | || ||||| ||||| |||||||| || |||||| || | | | Sbjct 216508 TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTT 216449 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | |||||| | | ||| | | || ||||| | |||||||||| | | | Sbjct 216448 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGT 216389 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 | |||||| | || ||||| ||| ||||||| ||| ||| || Sbjct 216388 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTACTG---------------CT 216344 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | ||||| | ||||| || ||||||||||||||||| |||| || Sbjct 216343 GTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATA 216284 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 || ||||| |||||||||||| | || ||||| |||||||| ||||| || |||||||| Sbjct 216283 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCA 216224 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 || |||||| ||| ||||| || | || || || || ||||| || ||||| ||| Sbjct 216223 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 216164 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || || || || ||| | | ||||| || || |||||| ||||| || | || Sbjct 216163 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGT 216104 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 |||| || || ||||| ||||| || || || || || || || || ||||||||||| Sbjct 216103 TACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGC 216044 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599 || | |||||||| |||||| ||| |||||||| | | | ||||||||| | || Sbjct 216043 CGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCT 215984 Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659 | || ||||| ||| | | ||||| || || | ||||| |||| ||||| |||||| Sbjct 215983 GCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 215924 Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGAT-GCTAACGGTAAGATTGTTCCTAC 172718 || ||||| ||||| ||||||||||| || | ||| || || ||| || || ||| Sbjct 215923 CTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAA-GGTCGCGTTATTAATAC 215865 Query 172719 ATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGC 172778 |||| ||| | | ||| | || || || ||||||||||| ||||| ||| | ||||| Sbjct 215864 TTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 215805 Query 172779 ACACAACTTCCCATTAGACCTTGCTTCT 172806 ||||||||||| ||||||| ||| || Sbjct 215804 TCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 300 bits (332), Expect = 2e-76 Identities = 474/678 (70%), Gaps = 2/678 (0%) Strand=Plus/Minus Query 171854 TTTATGTTGGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCT 171913 |||| | || ||||||||||| | |||||||| || | || ||| | | | Sbjct 1329 TTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCTGTAT 1270 Query 171914 TCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTG 171973 | || | || ||||| ||||| ||||| || ||||| || || || | || || ||| Sbjct 1269 TTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTT 1210 Query 171974 CGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACG 172033 | |||||||| | ||||| ||||| || ||||||||||| || |||| | || | Sbjct 1209 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGG 1150 Query 172034 CAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACA 172093 | || || | ||||| ||||| || |||||||| ||| | || ||||| ||||| |||| Sbjct 1149 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 1090 Query 172094 ATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGG 172153 |||| || |||||| || | | | | |||||| | | ||| | | || |||| Sbjct 1089 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 1030 Query 172154 GAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATT 172213 | | |||||||||| | | | | |||||| | || ||||| ||| ||||||| Sbjct 1029 GTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 970 Query 172214 CAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCAT 172273 |||| ||||| |||| || |||||| ||| | | ||||| | ||||| || | Sbjct 969 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTT 910 Query 172274 TCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAG 172333 |||||||||||||||| |||| || || ||||| |||||||||||| | || ||||| | Sbjct 909 TCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGG 850 Query 172334 CAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAG 172393 ||||||| ||||| || |||||||| || |||||| ||| ||||| || | || || | Sbjct 849 CAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGTG 790 Query 172394 GATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAA 172453 | || ||||| || || || ||||| || || || ||| | | ||||| || || | Sbjct 789 GTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCA 730 Query 172454 CTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACA 172513 ||||| ||||| || | || |||| || || ||||| ||||| || | || | Sbjct 729 CTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGGAAGAGACTT--AATA 672 Query 172514 TAGTAGCAGCACACGGTT 172531 | || || || || |||| Sbjct 671 TTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 248 bits (274), Expect = 1e-60 Identities = 355/500 (71%), Gaps = 5/500 (1%) Strand=Plus/Plus Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 || ||||| ||||| ||||| || ||||| || || || | || || ||| | |||| Sbjct 288291 GCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCT 288350 Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041 || | ||||| ||||| || ||||||||||| || |||| | || || || || Sbjct 288351 TTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGA 288410 Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101 | ||||| ||||| || |||||||| ||| | || ||||| ||||| |||||||| || Sbjct 288411 TTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGC 288470 Query 172102 CCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAG 172161 |||||| || | | | | |||||| | | ||| | | || ||||| | || Sbjct 288471 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 288530 Query 172162 TGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCT 172221 |||||||| | | | | |||||| | || ||||| ||| ||||||||||| ||| Sbjct 288531 TGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 288590 Query 172222 GTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGAT 172281 || ||| || |||||| ||| | | ||||| | ||||| || ||||||||| Sbjct 288591 GTTGCAGTTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGAT 288650 Query 172282 GGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCAT 172341 |||||||| |||| || || ||||| |||||||||||| | || ||||| | |||||| Sbjct 288651 GGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCAC 288710 Query 172342 AACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTA 172401 ||||| || |||||||| || | |||| ||| ||||| ||||||| || || || Sbjct 288711 AACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGC-----TGTTTGGCGGTTCCCTA 288765 Query 172402 TTCTCAGCAATGCACGGTTC 172421 ||| || ||||| ||||| Sbjct 288766 TTCAGTGCTATGCATGGTTC 288785 >seq4136 Length=310402 Score = 140 bits (154), Expect = 4e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 172486 TTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTT 172545 || || ||||| ||||| || || || || || || || || ||||||||||| || | Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 172546 ATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTC 172605 |||||||| |||||| ||| |||||||| | | | ||||||||| | || | || Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 172606 CCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAAC 172665 ||||| ||| | | ||||| || || | ||||| |||| ||||| |||||||| ||| Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 172666 GGTTTCAACTTCAACCAATCAGTTGTAGAT 172695 || ||||| ||||||||||| || || ||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGAT 3064 >seq203 Length=971741 Score = 123 bits (136), Expect = 3e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 172608 TGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGG 172667 ||| ||| | | ||||| || || | ||||| |||| ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 172668 TTTCAACTTCAACCAATCAGTTGTAGAT-GCTAACGGTAAGATTGTTCCTACATGGGGTG 172726 ||||| ||||||||||| || || ||| || || ||| || || ||| |||| || Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTG 777940 Query 172727 ACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACT 172786 | | | ||| | || || || ||||||||||| ||||| ||| | ||||| ||||||| Sbjct 777941 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 778000 Query 172787 TCCCATTAGACCTTGCTTCT 172806 |||| ||||||| ||| || Sbjct 778001 TCCCTCTAGACCTAGCTGCT 778020 >seq4428 Length=185154 Score = 116 bits (128), Expect = 4e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 172278 TGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGA 172337 |||||||||||| ||| || || ||||| |||||||||||| | || ||||| ||||| Sbjct 19699 TGATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 19640 Query 172338 GCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATC 172397 | | ||||| || |||||| | || |||||| ||| ||||| || | || || || || Sbjct 19639 GTACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTC 19580 Query 172398 TTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGA 172457 ||||| || |||| ||||| || || || ||| | | ||||| || || ||||| Sbjct 19579 CCTATTCAGTGCTTTGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGA 19520 Query 172458 AGCAGAATC 172466 | ||||| Sbjct 19519 AAATGAATC 19511 >seq2635 Length=570798 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || || || ||| | || |||||||| |||||||||||||| || || Sbjct 375360 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTTTGTATTCCACATGGTGGAGG 375419 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||||| | |||||||||||||| Sbjct 375420 TGGTCCTGGCATGGGTCCTATTGGTGT 375446 >seq692 Length=852161 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || || || ||| | || |||||||| || ||||||||||| || || Sbjct 267375 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTTTGCATTCCACATGGTGGAGG 267434 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTTGTA 159804 ||||||||| | |||||||||||||| ||| || || | |||||| || Sbjct 267435 TGGTCCTGGCATGGGTCCTATTGGTGTTAAAAAGCACCTGGCTCCATTTTTA 267486 >seq2035 Length=9416 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 173710 TTTTCAAACAAAAGATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGG 173769 ||||||| ||| | | ||| | ||| | ||| | || ||||| |||| ||| | ||| Sbjct 3842 TTTTCAAT-AAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGG 3784 Query 173770 ACATCATCCATAGGTATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCT 173829 | | || || | || || || || || ||||| | || || |||||||| || Sbjct 3783 ATGAGTGCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCC 3724 Query 173830 CAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTT 173889 | || || | ||||| |||||||| || || |||||||||||||| || ||||| || Sbjct 3723 TAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTGTT 3664 Query 173890 CTTAATGAAGGTAT 173903 | ||||| ||||| Sbjct 3663 TTAAATGAGGGTAT 3650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588017960405920