Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq4204 553 2e-152 seq3130 401 7e-107 seq3676 295 7e-75 seq4136 176 5e-39 seq203 129 7e-25 seq2035 89.7 6e-13 seq4088 82.4 9e-11 >seq4204 Length=279751 Score = 553 bits (612), Expect = 2e-152 Identities = 717/989 (72%), Gaps = 19/989 (2%) Strand=Plus/Minus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 216748 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 216689 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 162503 ||||| || || | ||| | ||||| ||||| || || |||||||| || | || || Sbjct 216688 ATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCCC 216630 Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 162563 | || || || || || || ||||| || || || |||| | | ||||| ||||| Sbjct 216629 TCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAA 216570 Query 162564 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 162623 || ||||||||||| || |||| |||| || || || | ||||| || || || Sbjct 216569 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 216510 Query 162624 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 162683 |||||||| ||||| ||||||||||| | || || || || |||| | || | || Sbjct 216509 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 216450 Query 162684 ATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCG 162743 | |||||| | | || | | || ||||| ||||| |||||||| || ||| Sbjct 216449 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 216390 Query 162744 TCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGG 162802 ||| ||||||||||| ||||| ||| || ||||| | || ||| || Sbjct 216389 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTTAGCTACTGCTG------------ 216343 Query 162803 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 162862 | ||| || | |||||| | |||||||| ||||||||| | ||||| || || | Sbjct 216342 ---TTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 216286 Query 162863 TCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATC 162922 | |||||| ||||||| ||| |||| ||||| |||||||||||||| || ||||||| Sbjct 216285 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATC 216226 Query 162923 CCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACG 162982 | || |||||||| ||||| || ||||| ||||| ||||| || |||||||| ||||| | Sbjct 216225 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 216166 Query 162983 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATG 163042 |||| ||||| || ||| | || | || || ||||||| ||| || || | | Sbjct 216165 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGG 216106 Query 163043 GTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCG 163102 |||||| || |||||||| |||||||| || || || || || || ||||||||||| | Sbjct 216105 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTG 216046 Query 163103 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 163162 | || || |||||||||||||| || |||||||| ||||| || ||||||||| | | Sbjct 216045 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 215986 Query 163163 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 163222 |||| |||||||| || || || |||||||| || | || | || ||||| |||| Sbjct 215985 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 215926 Query 163223 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 163282 |||| ||||| ||||| |||||||| || | |||||| | || ||||| || | || | Sbjct 215925 ACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATA 215866 Query 163283 CCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATG 163342 | ||||| || | | |||||||| | | ||||||||||| |||||||| || |||| Sbjct 215865 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 215806 Query 163343 CTCACAACTTCCCACTTGACCTGGCAGCT 163371 ||||||||||||| || ||||| || ||| Sbjct 215805 CTCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 401 bits (444), Expect = 7e-107 Identities = 515/704 (73%), Gaps = 6/704 (1%) Strand=Plus/Minus Query 162395 GGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAA 162454 || ||||| ||| | ||||| || || |||| |||||||| || ||||||| || | Sbjct 1353 GGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTA 1294 Query 162455 CTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGAC 162513 | | ||| | ||||| ||||| || || |||||||| |||| || || || || || Sbjct 1293 CCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGAT 1235 Query 162514 ATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 162573 || || || || ||||| || || ||||||| | | ||||| ||||| || |||||| Sbjct 1234 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCT 1175 Query 162574 GGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCC 162633 ||||| || |||| |||| || || || | ||||| || || || |||||||| Sbjct 1174 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 1115 Query 162634 GCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTCCACTTC 162693 ||||| ||||||||||| | || || || || |||| | || | || | |||||| Sbjct 1114 GCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTC 1055 Query 162694 CTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATG 162753 | | || | | || ||||| ||||| |||||||| || |||||| |||||| Sbjct 1054 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 995 Query 162754 CGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCT 162812 ||||| ||||| ||| || ||||| || || ||||||||||| || | || || ||| | Sbjct 994 CGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 936 Query 162813 GGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTAC 162872 | | |||||| | |||||||| ||||||||| | ||||| || || || |||||| Sbjct 935 GATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 876 Query 162873 ATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACAT 162932 ||||||| ||| |||| ||||| |||||||||||||| || |||||||| || ||||| Sbjct 875 TTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACAT 816 Query 162933 GTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGT 162992 ||| ||||| || ||||| ||||||||||| || |||||||| || || ||||| ||||| Sbjct 815 GTTAGGTGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGT 756 Query 162993 TACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTT 163052 || ||| | || | || || ||||||| ||| || || ||||||||| || Sbjct 755 AACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATT 696 Query 163053 CGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTT 163096 |||||||| |||||||| | || || || || || ||||||| Sbjct 695 TGGTCAAGAGGAAGAGACTT--AATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 295 bits (326), Expect = 7e-75 Identities = 431/604 (71%), Gaps = 9/604 (1%) Strand=Plus/Plus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 |||||| | ||| ||| | ||| | ||||| || || |||| |||| || || || Sbjct 288189 TTCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTG 288248 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 162503 ||||| || || | || | ||||| ||||| || || |||||||| |||| || || Sbjct 288249 ATGATCCCTACCTTATTAACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCC 288307 Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 162563 || || || || || || || ||||| || || | ||| | | ||||| ||||| Sbjct 288308 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAA 288367 Query 162564 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 162623 || ||||||||||| || |||| |||| || || || | ||||| || || || Sbjct 288368 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 288427 Query 162624 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 162683 |||||||| ||||| ||||||||||| | || || || || |||| | || | || Sbjct 288428 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 288487 Query 162684 ATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCG 162743 | |||||| | | || | | || ||||| ||||| |||||||| || ||| Sbjct 288488 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 288547 Query 162744 TCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGG 162802 ||| ||||||||||| ||||| ||| || ||||| || || |||||||||| || | | Sbjct 288548 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTG 288606 Query 162803 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 162862 | || ||| || | |||||| | |||||||| ||||||||| | ||||| || || | Sbjct 288607 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 288666 Query 162863 TCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATC 162922 | |||||| ||||||| ||| |||| ||||| | |||||||||||| || ||||||| Sbjct 288667 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATC 288726 Query 162923 CCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACG 162982 | || | |||||| ||||| || | || || ||||| || |||||||| ||||| | Sbjct 288727 CATTTCGCATGTTAGGTGTAGC-----TGTTTGGCGGTTCCCTATTCAGTGCTATGCATG 288781 Query 162983 GTTC 162986 |||| Sbjct 288782 GTTC 288785 >seq4136 Length=310402 Score = 176 bits (194), Expect = 5e-39 Identities = 184/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 163051 TTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTG 163110 || |||||||| |||||||| || || || || || || ||||||||||| || || || Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 163111 ATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGG 163170 |||||||||||||| || |||||||| ||||| || ||||||||| | ||||| ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 163171 CCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAAC 163230 ||||| || || || |||||||| || | || | || ||||| |||||||| ||| Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 163231 GGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCA 163290 || ||||| |||||||| || | ||||| | || ||||| || | || || ||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 163291 GA 163292 || Sbjct 3033 GA 3032 >seq203 Length=971741 Score = 129 bits (142), Expect = 7e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 163173 TGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGG 163232 ||| || || || |||||||| || | || | || ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 163233 TTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGA 163292 ||||| |||||||| || | ||||| | || ||||| || | || || ||||| || Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 163293 CGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTT 163352 | | |||||||| | | ||||||||||| |||||||| || |||||||||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 163353 CCCACTTGACCTGGCAGCT 163371 ||| || ||||| || ||| Sbjct 778002 CCCTCTAGACCTAGCTGCT 778020 >seq2035 Length=9416 Score = 89.7 bits (98), Expect = 6e-13 Identities = 126/176 (72%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 164359 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGG 164418 ||||| || || || ||| | |||| || ||| | ||||| || || | ||| ||||| Sbjct 3842 TTTTC-AATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGG 3784 Query 164419 ACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGT 164478 | |||||||| | | ||||| ||||| || || ||||| || || ||||| Sbjct 3783 ATGAGTGCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCC 3724 Query 164479 CAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAGAACAT 164534 | || || | ||||| ||||||||||| || ||||||||||| ||||| || || Sbjct 3723 TAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATAT 3668 >seq4088 Length=340663 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 164047 TTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCA 164106 ||| | || || || |||| ||||| |||||||||| || || |||||| || ||| Sbjct 183953 TTTTTGATTTATCCATTGGGACAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCA 183894 Query 164107 GCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAA 164159 ||||| || ||||| | | ||| | |||||||||||||| ||||| ||||| Sbjct 183893 GCAATATTTCGATTCATTCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAA 183841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557552482564400