Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq4204 589 2e-163 seq3130 461 9e-125 seq3676 361 6e-95 seq203 141 1e-28 seq4428 140 4e-28 seq2035 132 5e-26 seq4136 116 4e-21 seq4131 91.5 2e-13 seq4268 82.4 9e-11 >seq4204 Length=279751 Score = 589 bits (652), Expect = 2e-163 Identities = 718/989 (73%), Gaps = 17/989 (2%) Strand=Plus/Minus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| ||| | ||| | || ||||| | |||||||| || |||| |||||||| ||| | Sbjct 216749 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 216690 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 |||||||||||| || | | ||||| ||||| || || ||||||||| || || | Sbjct 216689 GATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCC 216631 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 167265 ||| || || || |||||||| || || || ||| || |||| | | ||||| |||| Sbjct 216630 CTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACA 216571 Query 167266 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCA 167325 | || ||||||||||| || ||||| ||||| || || || | ||||| || || | Sbjct 216570 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 216511 Query 167326 TCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAG 167385 | |||||||| ||| | | || |||||||| |||||||| || |||| | || | | Sbjct 216510 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 216451 Query 167386 TTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACC 167445 || | |||||| | |||| | | ||||||||||||||||||||||| || || Sbjct 216450 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 216391 Query 167446 GTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTG 167505 |||| ||||||||||| ||||| ||||||||| | ||| | || Sbjct 216390 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTAC---------------TG 216346 Query 167506 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTA 167565 |||| ||| | | |||||| | |||||||| ||||||||| | |||||| | || | Sbjct 216345 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 216286 Query 167566 TCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 167625 | |||||||| ||||||| ||| |||| ||||| ||||||||||||||||| ||||| | Sbjct 216285 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATC 216226 Query 167626 CCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACG 167685 | || || ||| | || || ||||| |||||||||||||| || |||||||| ||||| | Sbjct 216225 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 216166 Query 167686 GTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATG 167745 |||| |||| |||||| || | | |||||||| |||| ||| || || | | Sbjct 216165 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGG 216106 Query 167746 GTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCG 167805 |||||| || ||||| || |||||||| ||||| || || || |||||||||||||| | Sbjct 216105 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTG 216046 Query 167806 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGG 167865 | || | ||||||||||| || || |||||||| || || | ||||||||||||| Sbjct 216045 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 215986 Query 167866 CAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCA 167925 | || |||||||| || || || |||| |||| Sbjct 215985 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 215926 Query 167926 ACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTA 167985 |||| ||||| ||||| |||||||| ||| | |||||||| ||| ||| | || Sbjct 215925 ACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATA 215866 Query 167986 CTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 168045 ||||||| || | ||||||||||| ||| ||||||||||| |||||||| ||||||| Sbjct 215865 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 215806 Query 168046 CTCACAACTTCCCTCTCGACCTTGCTGCT 168074 |||||||||||||||| ||||| |||||| Sbjct 215805 CTCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 461 bits (510), Expect = 9e-125 Identities = 523/698 (75%), Gaps = 4/698 (1%) Strand=Plus/Minus Query 167103 ACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTG 167162 || ||||| | |||||||| || |||| |||||||| ||| ||||||||||||| || Sbjct 1348 ACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTA 1289 Query 167163 CTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGA 167221 | | ||||| ||||| || || ||||||||| ||| || ||||| || || || || Sbjct 1288 TTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGA 1230 Query 167222 TGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGC 167281 |||||| || || || ||| ||||||| | | ||||| ||||| || ||||||||||| Sbjct 1229 TGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGC 1170 Query 167282 AGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAC 167341 || ||||| ||||| || || || | ||||| || || || |||||||| ||| | Sbjct 1169 CATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATC 1110 Query 167342 CCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGAT 167401 | || |||||||| |||||||| || |||| | || | ||| | |||||| | | Sbjct 1109 TGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACT 1050 Query 167402 TGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCC 167461 ||| | | ||||||||||||||||||||||| || |||||| ||||||||||| Sbjct 1049 TGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCC 990 Query 167462 CTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTA 167521 ||||| ||||||||| || ||||| || || || || ||||||| ||| | | || Sbjct 989 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 930 Query 167522 TCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAA 167581 |||| | |||||||| ||||||||| | |||||| | || || |||||||| ||||| Sbjct 929 TCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAA 870 Query 167582 CTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGG 167641 || ||| |||| ||||| ||||||||||||||||| ||||| || || || ||| | || Sbjct 869 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 810 Query 167642 CGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTC 167701 || ||||| |||||||| ||||| || |||||||| || || ||||| |||| ||||| Sbjct 809 TGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTC 750 Query 167702 TTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCA 167761 | || | | |||||||| |||| ||| || || ||||||||| || ||||| Sbjct 749 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCA 690 Query 167762 GGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTT 167799 || |||||||| ||| || || || |||||||||| Sbjct 689 AGAGGAAGAGAC--TTAATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 361 bits (400), Expect = 6e-95 Identities = 444/604 (74%), Gaps = 7/604 (1%) Strand=Plus/Plus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| ||| | ||| | | ||||| | |||||||| || |||| |||| || ||| | Sbjct 288188 CTTCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTT 288247 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 |||||||||||| || | | |||| | ||||| || || ||||||||| ||| || | Sbjct 288248 GATGATCCCTACCTTATTAACTGCAA-CTTCTGTATTTATTATCGCCTTCATCGCAGCCC 288306 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 167265 |||| || || || |||||||| || || || ||| | ||| | | ||||| |||| Sbjct 288307 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACA 288366 Query 167266 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCA 167325 | || ||||||||||| || ||||| ||||| || || || | ||||| || || | Sbjct 288367 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 288426 Query 167326 TCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAG 167385 | |||||||| ||| | | || |||||||| |||||||| || |||| | || | | Sbjct 288427 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 288486 Query 167386 TTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACC 167445 || | |||||| | |||| | | ||||||||||||||||||||||| || || Sbjct 288487 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 288546 Query 167446 GTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTG 167505 |||| ||||||||||| ||||| ||||||||| || ||||| || || | || ||| Sbjct 288547 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTG 288606 Query 167506 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTA 167565 |||| ||| | | |||||| | |||||||| ||||||||| | |||||| | || | Sbjct 288607 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 288666 Query 167566 TCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 167625 | |||||||| ||||||| ||| |||| ||||| | ||||||||||||||| ||||| | Sbjct 288667 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATC 288726 Query 167626 CCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACG 167685 | || | ||| | || || |||| || |||||||| || |||||||| ||||| | Sbjct 288727 CATTTCGCATGTTAGGTGTAGCTG-----TTTGGCGGTTCCCTATTCAGTGCTATGCATG 288781 Query 167686 GTTC 167689 |||| Sbjct 288782 GTTC 288785 >seq203 Length=971741 Score = 141 bits (156), Expect = 1e-28 Identities = 123/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 167922 TTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTG 167981 |||||||| ||||| ||||| |||||||| ||| | ||||||| ||| ||| | Sbjct 777868 TTCAACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATT 777927 Query 167982 CCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 168041 ||||||||| || | ||||||||||| ||| ||||||||||| |||||||| ||| Sbjct 777928 AATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGT 777987 Query 168042 AATGCTCACAACTTCCCTCTCGACCTTGCTGCT 168074 |||||||||||||||||||| ||||| |||||| Sbjct 777988 AATGCTCACAACTTCCCTCTAGACCTAGCTGCT 778020 >seq4428 Length=185154 Score = 140 bits (154), Expect = 4e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 167553 ATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 167612 |||||| | | || |||||||| ||||||| ||| |||| ||||| |||||| ||||| Sbjct 19692 ATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGTACAAC 19633 Query 167613 ATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTC 167672 ||||| ||||| | || || ||| | || || ||||| |||||||||||||| || ||| Sbjct 19632 ATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTC 19573 Query 167673 AGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAG 167732 ||||| |||| ||||| |||| |||||| || | | |||||||| |||| ||| Sbjct 19572 AGTGCTTTGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAA 19513 Query 167733 TC 167734 || Sbjct 19512 TC 19511 >seq2035 Length=9416 Score = 132 bits (146), Expect = 5e-26 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 169227 AATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGT 169286 ||||| | ||||| ||||||||||||| ||||| || || | ||| | |||| ||| Sbjct 3837 AATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGT 3778 Query 169287 TCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAG 169346 | || || | | || || ||||| ||||| ||||| ||||||||||||||| | || Sbjct 3777 GCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCCTAGGAA 3718 Query 169347 ATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAAC 169406 ||| | ||||| |||||||| || |||||||| ||||||||||| || || | || || Sbjct 3717 ATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTGTTTTAAAT 3658 Query 169407 GAAGGT 169412 || ||| Sbjct 3657 GAGGGT 3652 >seq4136 Length=310402 Score = 116 bits (128), Expect = 4e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 167754 TTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTG 167813 || ||||| || |||||||| ||||| || || || |||||||||||||| || || | Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 167814 ATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGG 167873 ||||||||||| || || |||||||| || || | |||||||||||||| || ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 167874 CCTGTTGTTGGTATCTGGT 167892 ||||| || || || |||| Sbjct 3153 CCTGTAGTAGGGATTTGGT 3135 >seq4131 Length=315116 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/187 (71%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 167293 CTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGT 167352 ||||| || ||||| | ||||| || | || |||||||| ||| | || |||| Sbjct 226340 CTTCTGCGGCGATTGGATTGCACTTTTACCTAATTTGGGAAGCTGCATATGTTGATGAGT 226399 Query 167353 GGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATG 167412 |||| |||||| | || |||| | || | ||| | |||||| | | | || | | Sbjct 226400 GGTTATACAATAGCGGCCCTTATGAGCTAATTGTTCTACACTTCTT-ACTAGCTTGT--- 226455 Query 167413 CCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTG 167472 | ||||||||||||||||||||| || | |||| ||||||||||| ||||| || Sbjct 226456 --TGTATGGGTCGTGAGTGGGAACTGAGTTTCAGTCTGGGTATGCGTCCTTGGATTGTTG 226513 Query 167473 TTGCATA 167479 ||||||| Sbjct 226514 TTGCATA 226520 >seq4268 Length=1125959 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 169340 CCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCT 169399 ||| || ||| | ||||| |||||||| || |||||||| ||||||||||| || || || Sbjct 683087 CCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCT 683028 Query 169400 CTTGAACGAAGGTCTTCGTGCATGG 169424 || ||||| ||| ||||||| ||| Sbjct 683027 TTTAAACGAGGGTATTCGTGCGTGG 683003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560576311632800