Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq4204 464 9e-126 seq3130 356 3e-93 seq3676 266 5e-66 seq4428 140 5e-28 seq203 127 3e-24 seq4136 116 6e-21 >seq4204 Length=279751 Score = 464 bits (514), Expect = 9e-126 Identities = 686/972 (71%), Gaps = 15/972 (2%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | | Sbjct 216727 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACT 216668 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || |||||| | || |||| || ||||| || || || Sbjct 216667 GCAACTTCTGTATTTATTATCGCCTTCATCACAGCCCCTCTAGTAGATATTGATGGTATT 216608 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | ||||| ||| || |||||||| | ||||| ||||| || ||||||||||| || | Sbjct 216607 CGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATT 216548 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || |||||||| ||||| ||||| || |||||||| ||| | ||||| Sbjct 216547 CCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 216488 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 || ||| | |||||||| || |||| | || || | | |||||| | ||||| | Sbjct 216487 GAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 216428 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || || || | |||||||||| || | | | |||||| | |||||||| Sbjct 216427 GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATT 216368 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || | || || |||||| | ||| | | ||||| | Sbjct 216367 GCTGTTGCATATTTAGC-----TA-CTGCTG---------TTTTCTTGATTTATCCTATT 216323 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||||||||||| |||||| | ||||| ||||| || ||||||| ||| Sbjct 216322 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 216263 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||| ||||||||||| || ||||| ||||| |||||||||||||| ||| Sbjct 216262 ATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 216203 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| ||||| | ||| ||| ||||| ||||| | || || ||| | | Sbjct 216202 GGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTG 216143 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || ||||| | |||||| || | ||||||| || || |||||||| Sbjct 216142 ATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAA 216083 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 || || || || || || || || || ||||||||||| || | ||||||||||| || Sbjct 216082 GAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTAATCTTCCAATATGCT 216023 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 ||| |||||||| | | | ||||||||| | || || | ||||| | | || Sbjct 216022 AGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATT 215963 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| | |||||||| |||||||| ||||| ||||| |||||| Sbjct 215962 TGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTCAAC 215903 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || ||||| | || ||| |||||| ||||||||| || | | ||| | Sbjct 215902 CAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGT 215843 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || ||||||||||||||||||||||| ||||| |||||||||||||| ||||| | Sbjct 215842 GCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTA 215783 Query 216275 GCTGCTGCTGAA 216286 |||||| |||| Sbjct 215782 GCTGCTCTTGAA 215771 >seq3130 Length=1765 Score = 356 bits (394), Expect = 3e-93 Identities = 494/691 (71%), Gaps = 2/691 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | | Sbjct 1342 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACT 1283 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || |||||||| || ||||| || ||||| || || || Sbjct 1282 GCAACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATT 1223 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | ||||| ||| ||||||||||| | ||||| ||||| || ||||||||||| || | Sbjct 1222 CGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATT 1163 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || |||||||| ||||| ||||| || |||||||| ||| | ||||| Sbjct 1162 CCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 1103 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 || ||| | |||||||| || |||| | || || | | |||||| | ||||| | Sbjct 1102 GAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 1043 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || || || | |||||||||| || | | | |||||| | |||||||| Sbjct 1042 GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATT 983 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | ||||| ||| || ||| | | ||||| | Sbjct 982 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATT 923 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||||||||||| |||||| | ||||| ||||| || ||||||| ||| Sbjct 922 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 863 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||| ||||||||||| || ||||| ||||| |||||||||||||| ||| Sbjct 862 ATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 803 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||||||||| | ||| ||| || || ||||| | || || ||| | | Sbjct 802 GGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTG 743 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || ||||| | |||||| || | ||||||| || || |||||||| Sbjct 742 ATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGGAA 683 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTT 216005 || || | || || || || || || |||| Sbjct 682 GAGACTT--AATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 266 bits (294), Expect = 5e-66 Identities = 359/500 (72%), Gaps = 5/500 (1%) Strand=Plus/Plus Query 215396 GCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCT 215455 || |||||||| || ||||| || ||||| || || || | ||||| ||| | |||| Sbjct 288291 GCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCT 288350 Query 215456 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGA 215515 ||| | ||||| ||||| || ||||||||||| || | |||| ||| || |||||| Sbjct 288351 TTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGA 288410 Query 215516 TTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGA 215575 || ||||| ||||| || |||||||| ||| | ||||| || ||| | |||||||| || Sbjct 288411 TTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGC 288470 Query 215576 CCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAG 215635 |||| | || || | | |||||| | ||||| | || || || | || Sbjct 288471 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 288530 Query 215636 TGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCT 215695 |||||||| || | | | |||||| | |||||||| |||||| || || || ||| Sbjct 288531 TGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 288590 Query 215696 GTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGAT 215755 || | | ||| ||| || ||| | | ||||| | ||||| || |||||||||| Sbjct 288591 GTTGCAGTTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGAT 288650 Query 215756 GCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCAC 215815 | |||||| | ||||| ||||| || ||||||| ||| |||| ||||||| |||||| Sbjct 288651 GGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCAC 288710 Query 215816 AACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTG 215875 ||||| || ||||| ||||| | |||||||||||| |||| || || ||||| | Sbjct 288711 AACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGCTG-----TTTGGCGGTTCCCTA 288765 Query 215876 TTCTCTGCAATGCACGGTTC 215895 ||| ||| ||||| ||||| Sbjct 288766 TTCAGTGCTATGCATGGTTC 288785 >seq4428 Length=185154 Score = 140 bits (154), Expect = 5e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 215752 TGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGA 215811 ||||| |||||| | | ||| ||||| || ||||||| ||| |||| |||||||| || Sbjct 19699 TGATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 19640 Query 215812 GCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTC 215871 | ||||||| || ||||| |||| |||||||||||||| |||||||| ||||| ||||| Sbjct 19639 GTACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTC 19580 Query 215872 ATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGA 215931 | ||| ||| |||| ||||| | || || ||| | | ||||| || || ||||| Sbjct 19579 CCTATTCAGTGCTTTGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGA 19520 Query 215932 GCAAGAATCT 215941 | |||||| Sbjct 19519 AAATGAATCT 19510 >seq203 Length=971741 Score = 127 bits (140), Expect = 3e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 |||||||| |||||||| ||||| ||||| |||||||| ||||| || || ||| Sbjct 777859 ACTATGGCTTTCAACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGT 777918 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 |||||| ||||||||| || | | ||| | || |||||||||||||||||| Sbjct 777919 CGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATG 777978 Query 216239 CACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 ||||| ||||| |||||||||||||| ||||| | |||||| |||| Sbjct 777979 CACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTCTTGAA 778026 >seq4136 Length=310402 Score = 116 bits (128), Expect = 6e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 215960 TTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTC 216019 || || |||||||| || || || || || || || || || ||||||||||| || | Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 216020 ATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTC 216079 ||||||||||| || ||| |||||||| | | | ||||||||| | || || | Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 216080 CCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAAC 216139 ||||| | | || ||| ||||| | ||| | |||||||| |||||||| ||| Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 216140 GGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCA 216199 || ||||| |||||||| ||||| || || ||| |||||| ||||||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 216200 GA 216201 || Sbjct 3033 GA 3032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745039484262560