Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq4204 572 2e-158 seq3130 394 1e-104 seq3676 291 1e-73 seq4136 187 3e-42 seq203 156 5e-33 seq4428 132 6e-26 seq2035 120 4e-22 seq4088 82.4 9e-11 >seq4204 Length=279751 Score = 572 bits (634), Expect = 2e-158 Identities = 723/991 (73%), Gaps = 23/991 (2%) Strand=Plus/Minus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 |||||| | ||| | || ||| | || ||||| || |||| ||||| ||||| || Sbjct 216748 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 216689 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 |||||||| || | ||| | ||||| ||||| || || | || ||| | |||| || Sbjct 216688 ATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCCC 216630 Query 181913 TCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAA 181972 || || ||||| || ||||| || || || || || |||| | | ||||| ||||| Sbjct 216629 TCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAA 216570 Query 181973 CATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAAT 182032 || ||||||||||| || | || | || || || || | ||||| |||||||| Sbjct 216569 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 216510 Query 182033 CTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGT 182092 ||||||||||| || ||||||||||| | || || || || |||| | || |||| Sbjct 216509 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 216450 Query 182093 TTTCCACTTCCTGATCGGCATCTACGCCT---ACATGGGACGTGAGTGGGAACTTTCTTA 182149 | | |||||| | | || | || || | | ||||| |||||||||||||| || Sbjct 216449 TCTACACTTCTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTT 216393 Query 182150 CCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATC 182209 ||| | ||||||||||| ||||| ||| ||||| | ||| | Sbjct 216392 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTAC--------------- 216348 Query 182210 TGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGG 182269 |||||| ||||| | |||||| | |||||||| ||||| |||| ||||| | || Sbjct 216347 TGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGG 216288 Query 182270 AATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCA 182329 ||| || || || ||||||| |||| | || ||||| || ||||||||||| |||||||| Sbjct 216287 AATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCA 216228 Query 182330 TCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCA 182389 ||| || |||||||| |||||||| ||||||||||| ||||| || || ||||| ||||| Sbjct 216227 TCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCA 216168 Query 182390 CGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTA 182449 ||||| ||||| || ||| | || | || || ||||| | || || || | Sbjct 216167 TGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGA 216108 Query 182450 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTT 182509 ||||||| || |||||||| |||||||| ||||| || || || || ||||| ||||| Sbjct 216107 GGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTT 216048 Query 182510 CGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 182569 || || || ||||||||||| || || |||||||| ||||| || ||||||||| | Sbjct 216047 TGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 215988 Query 182570 TGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATT 182629 ||||| |||||||| || || || |||||||| || | ||| | || ||||| || Sbjct 215987 GGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTT 215928 Query 182630 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAA 182689 |||||| ||||| ||||| |||||||| || | |||||| | || ||||| || |||| Sbjct 215927 CAACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAA 215868 Query 182690 CACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAA 182749 |||||||| ||| | | ||||||||| ||||||||||||||| ||||| || ||||| Sbjct 215867 TACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAA 215808 Query 182750 CGCACACAACTTCCCACTAGATCTTGCTGCT 182780 || ||||||||||| ||||| || |||||| Sbjct 215807 TGCTCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 394 bits (436), Expect = 1e-104 Identities = 507/693 (73%), Gaps = 10/693 (1%) Strand=Plus/Minus Query 181815 ACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCG 181874 ||| | || ||||| || |||| ||||| ||||| |||||||||| || | ||| | Sbjct 1342 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACT 1283 Query 181875 GCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTAT 181933 ||||| ||||| || || | || ||| | ||||| ||||| || ||||| || ||||| Sbjct 1282 GCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTAT 1224 Query 181934 CCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 181993 || || || || ||||||| | | ||||| ||||| || ||||||||||| || | Sbjct 1223 TCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTAT 1164 Query 181994 CCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGA 182053 || | || || || || | ||||| |||||||| ||||||||||| || |||| Sbjct 1163 TCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 1104 Query 182054 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCAT 182113 ||||||| | || || || || |||| | || ||||| | |||||| | | || | Sbjct 1103 TGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--T 1046 Query 182114 CTACGCCT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTG 182170 || || | | ||||| |||||||||||||| || ||| | ||||||||||| || Sbjct 1045 GTA-GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTG 987 Query 182171 GATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCC 182230 ||| ||| ||||| || ||||| || || || || ||||||| ||||| | ||||| Sbjct 986 GATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCC 927 Query 182231 TTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTA 182290 | | |||||||| ||||| |||| ||||| | ||||| || || || ||||||| Sbjct 926 TATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTT 867 Query 182291 TATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGT 182350 |||| | || ||||| || ||||||||||| ||||||||||| || |||||||| ||||| Sbjct 866 TATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGT 807 Query 182351 AGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTC 182410 ||| ||||||||||||||||| || || ||||| || || ||||| ||||| || ||| Sbjct 806 AGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAG 747 Query 182411 ACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGA 182470 | || | || || ||||| | || || || ||||||||| || |||||||| Sbjct 746 TTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGA 687 Query 182471 AGAAGAGACCTATAACATCGTTGCAGCCCATGG 182503 |||||||| ||| || || || || ||||| Sbjct 686 GGAAGAGAC--TTAATATTGTGGCCGCTCATGG 656 >seq3676 Length=461187 Score = 291 bits (322), Expect = 1e-73 Identities = 419/585 (72%), Gaps = 13/585 (2%) Strand=Plus/Plus Query 181815 ACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCG 181874 ||| | || ||||| || |||| |||| | ||| |||||||||| || | || | Sbjct 288210 ACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTGATGATCCCTACCTTATTAACT 288269 Query 181875 GCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTAT 181933 ||||| ||||| || || | || ||| | ||||| ||||| || ||||| || ||||| Sbjct 288270 GCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTAT 288328 Query 181934 CCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 181993 || || || || | ||| | | ||||| ||||| || ||||||||||| || | Sbjct 288329 TCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTAT 288388 Query 181994 CCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGA 182053 || | || || || || | ||||| |||||||| ||||||||||| || |||| Sbjct 288389 TCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 288448 Query 182054 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCAT 182113 ||||||| | || || || || |||| | || ||||| | |||||| | | || | Sbjct 288449 TGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--T 288506 Query 182114 CTACGCCT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTG 182170 || || | | ||||| |||||||||||||| || ||| | ||||||||||| || Sbjct 288507 GTA-GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTG 288565 Query 182171 GATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCC 182230 ||| ||| ||||| || ||||| || || | || ||||||| ||||| | ||||| Sbjct 288566 GATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATTTATCC 288625 Query 182231 TTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTA 182290 | | |||||||| ||||| |||| ||||| | ||||| || || || ||||||| Sbjct 288626 TATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTT 288685 Query 182291 TATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGT 182350 |||| | || ||||| | ||||||||||| ||||||||||| || | |||||| ||||| Sbjct 288686 TATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGT 288745 Query 182351 AGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTC 182395 ||| | || || ||||| || || ||||| ||||| ||||| Sbjct 288746 AGC-----TGTTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTC 288785 >seq4136 Length=310402 Score = 187 bits (206), Expect = 3e-42 Identities = 187/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 182460 TTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTG 182519 || |||||||| |||||||| ||||| || || || || ||||| ||||| || || || Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 182520 ATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGG 182579 ||||||||||| || || |||||||| ||||| || ||||||||| | ||||| ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 182580 CCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAAC 182639 ||||| || || || |||||||| || | ||| | || ||||| |||||||| ||| Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 182640 GGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCA 182699 || ||||| |||||||| || | ||||| | || ||||| || |||| |||||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 182700 GAT 182702 ||| Sbjct 3033 GAT 3031 >seq203 Length=971741 Score = 156 bits (172), Expect = 5e-33 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 182582 TGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGG 182641 ||| || || || |||||||| || | ||| | || ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 182642 TTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGA 182701 ||||| |||||||| || | ||||| | || ||||| || |||| |||||||| || Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 182702 TGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTT 182761 | | | ||||||||| ||||||||||||||| ||||| || ||||| || |||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 182762 CCCACTAGATCTTGCTGCT 182780 ||| ||||| || |||||| Sbjct 778002 CCCTCTAGACCTAGCTGCT 778020 >seq4428 Length=185154 Score = 132 bits (146), Expect = 6e-26 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 182253 GATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAG 182312 |||| ||||| | | ||| || || || ||||||| |||| | || ||||| || ||| Sbjct 19698 GATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 19639 Query 182313 CACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCA 182372 ||||||| ||||||||| | || |||||||| |||||||| ||||||||||| ||||| Sbjct 19638 TACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCC 19579 Query 182373 CTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCT 182408 || || ||||| |||| ||||| ||||| || ||| Sbjct 19578 CTATTCAGTGCTTTGCATGGTTCCTTGGTAACCTCT 19543 >seq2035 Length=9416 Score = 120 bits (132), Expect = 4e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 183924 CAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTC 183983 |||||| |||||||| | ||||||||| | ||||| || |||| ||| | ||| | Sbjct 3838 CAATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAG 3779 Query 183984 TTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGA 184043 | |||||||| | | || || ||||| || || ||||| ||||| ||||| | || Sbjct 3778 TGCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCCTAGGA 3719 Query 184044 GATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAA 184103 ||| | ||||| |||||||| ||||||||||| |||||||| || || || || | || Sbjct 3718 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTGTTTTAAA 3659 Query 184104 TGAAGG 184109 ||| || Sbjct 3658 TGAGGG 3653 >seq4088 Length=340663 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 183605 TATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAG 183664 |||| | || |||||| |||| || ||| ||||||||||| || ||||| || |||| Sbjct 183955 TATTTTTGATTTATCCATTGGGACAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAG 183896 Query 183665 CAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAA 183719 ||||||| ||| ||||| | | ||| | || || || || || |||||||| || Sbjct 183895 CAGCAATATTTCGATTCATTCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAA 183841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611661423883600