Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq4204 625 3e-174 seq3130 457 1e-123 seq3676 403 2e-107 seq4136 178 1e-39 seq203 165 9e-36 seq2035 136 4e-27 seq4428 120 3e-22 seq4131 105 8e-18 >seq4204 Length=279751 Score = 625 bits (692), Expect = 3e-174 Identities = 732/988 (74%), Gaps = 17/988 (2%) Strand=Plus/Minus Query 164764 TTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTT 164823 || ||| | ||| | ||| |||| | ||||||||||| |||| |||||||||||| | Sbjct 216748 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 216689 Query 164824 ATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCC 164882 |||||||| || | | || || | ||| ||||||| || |||||| | || || Sbjct 216688 ATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCCC 216630 Query 164883 CCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAA 164942 | || || ||||||||||||||||| ||||| | ||||| || | || || ||||| Sbjct 216629 TCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAA 216570 Query 164943 CATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTAT 165002 || ||||||||||| | |||| ||||| || |||||| | ||||| || || || Sbjct 216569 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 216510 Query 165003 TTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGT 165062 ||||||||||||| | | ||||| ||||| ||||| || || ||||| || | |||| Sbjct 216509 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 216450 Query 165063 CTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 165122 | |||||| | | ||||||||||| || ||||||||||||||||||||| || ||| Sbjct 216449 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 216390 Query 165123 CCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGC 165182 || |||||||||||||||||| || ||||| | | ||| ||||| Sbjct 216389 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATA---------TTTAGCTACTGCT----- 216344 Query 165183 AGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTAT 165242 |||||| || | |||||| | |||||||| ||||||||||||||||||||| | || || Sbjct 216343 -GTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 216285 Query 165243 CTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCC 165302 ||||||||||| |||| |||| | || ||||| ||||| || ||||| ||||||||||| Sbjct 216284 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCC 216225 Query 165303 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 165362 || |||||| | || || ||||| |||||||| || || || ||| |||||||||||| Sbjct 216224 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 216165 Query 165363 AAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGG 165422 | || || || | || | || || ||||||| || | || | || Sbjct 216164 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGG 216105 Query 165423 TTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGG 165482 ||| | ||||| ||||| |||||||| ||||| || || || || || || ||||| || Sbjct 216104 TTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGG 216045 Query 165483 TCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGC 165542 || | || |||||||| || || ||||| || ||||| | ||||||||| | || Sbjct 216044 CCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGC 215985 Query 165543 AGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAA 165602 || ||||||||||| || || |||||||||||| | ||| |||| || ||||| ||||| Sbjct 215984 TGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 215925 Query 165603 CCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTAC 165662 ||| ||||| ||||| |||||||| ||| | ||||||| || | || ||| Sbjct 215924 CCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATAC 215865 Query 165663 TTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 165722 ||||||||| | | ||||||||| ||| ||||||||||| ||||| || ||||| || Sbjct 215864 TTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 215805 Query 165723 TCACAACTTCCCCCTCGACCTCGCTGCT 165750 |||||||||||| || ||||| |||||| Sbjct 215804 TCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 457 bits (506), Expect = 1e-123 Identities = 451/580 (78%), Gaps = 2/580 (0%) Strand=Plus/Minus Query 164784 CACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGC 164843 |||| | ||||||||||| |||| |||||||||||| | |||||||| || | | Sbjct 1343 CACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGAC 1284 Query 164844 CGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTA 164902 || || | ||| ||||||| || |||||||| || || || || || |||||||||| Sbjct 1283 TGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTA 1225 Query 164903 TTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCG 164962 ||||||| ||||| | |||||| || | || || ||||| || ||||||||||| | Sbjct 1224 TTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTA 1165 Query 164963 TTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGG 165022 |||| ||||| || |||||| | ||||| || || ||||||||||||||| | | | Sbjct 1164 TTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTG 1105 Query 165023 ATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTG 165082 |||| ||||| ||||| || || ||||| || | |||| | |||||| | | |||| Sbjct 1104 ATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTG 1045 Query 165083 TAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGA 165142 ||||||| || ||||||||||||||||||||| || ||| || |||||||||||||||| Sbjct 1044 TAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGA 985 Query 165143 TTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTT 165202 || || |||||| || ||||| || |||||| | || |||||| || | |||||| Sbjct 984 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTA 925 Query 165203 TCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 165262 | |||||||| ||||||||||||||||||||| | || || ||||||||||| |||| || Sbjct 924 TTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTA 865 Query 165263 TGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTG 165322 || | || ||||| ||||| || ||||| ||||||||||| || |||||| | || || | Sbjct 864 TGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAG 805 Query 165323 CTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 165362 |||| ||||||||||| || || ||| |||||| ||||| Sbjct 804 CTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGG 765 >seq3676 Length=461187 Score = 403 bits (446), Expect = 2e-107 Identities = 439/580 (76%), Gaps = 7/580 (1%) Strand=Plus/Plus Query 164784 CACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGC 164843 |||| | ||||||||||| |||| |||| || |||| | |||||||| || | | Sbjct 288209 CACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTGATGATCCCTACCTTATTAAC 288268 Query 164844 CGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTA 164902 || || | ||| ||||||| || |||||||| || || || || || |||||||||| Sbjct 288269 TGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTA 288327 Query 164903 TTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCG 164962 ||||||| ||||| | |||| || | || || ||||| || ||||||||||| | Sbjct 288328 TTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTA 288387 Query 164963 TTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGG 165022 |||| ||||| || |||||| | ||||| || || ||||||||||||||| | | | Sbjct 288388 TTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTG 288447 Query 165023 ATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTG 165082 |||| ||||| ||||| || || ||||| || | |||| | |||||| | | |||| Sbjct 288448 ATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTG 288507 Query 165083 TAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGA 165142 ||||||| || ||||||||||||||||||||| || ||| || |||||||||||||||| Sbjct 288508 TAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGA 288567 Query 165143 TTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTT 165202 || || |||||| || ||||| || | |||| | || |||||| || | |||||| Sbjct 288568 TTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATTTATCCTA 288627 Query 165203 TCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 165262 | |||||||| ||||||||||||||||||||| | || || ||||||||||| |||| || Sbjct 288628 TTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTA 288687 Query 165263 TGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTG 165322 || | || ||||| | ||| || ||||| ||||||||||| || | |||| | || || | Sbjct 288688 TGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAG 288747 Query 165323 CTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 165362 ||| || || || || || ||| |||||||||||| Sbjct 288748 CTG-----TTTGGCGGTTCCCTATTCAGTGCTATGCATGG 288782 >seq4136 Length=310402 Score = 178 bits (196), Expect = 1e-39 Identities = 172/220 (78%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 165426 TAAG-TTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTC 165484 |||| ||||| ||||| |||||||| ||||| || || || || || || ||||| || | Sbjct 3278 TAAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCC 3219 Query 165485 GTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAG 165544 | | || |||||||| || || ||||| || ||||| | ||||||||| | || | Sbjct 3218 GATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTG 3159 Query 165545 CATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACC 165604 | ||||||||||| || || |||||||||||| | ||| |||| || ||||| ||||||| Sbjct 3158 CTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 3099 Query 165605 TGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCA 165644 | ||||| ||||| |||||||| ||| | |||||||| || Sbjct 3098 TAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCA 3059 >seq203 Length=971741 Score = 165 bits (182), Expect = 9e-36 Identities = 156/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 165552 TGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGG 165611 |||||| || || |||||||||||| | ||| |||| || ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 165612 TTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGA 165671 ||||| |||||||| ||| | |||||||| || | || |||||||||||| Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 165672 CGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTT 165731 | | ||||||||| ||| ||||||||||| ||||| || ||||| ||||||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 165732 CCCCCTCGACCTCGCTGCT 165750 ||| || ||||| |||||| Sbjct 778002 CCCTCTAGACCTAGCTGCT 778020 >seq2035 Length=9416 Score = 136 bits (150), Expect = 4e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 166905 AATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGT 166964 ||||| | ||||| ||||||||||||| ||||| || || | ||| | |||| ||| Sbjct 3837 AATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGT 3778 Query 166965 TCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAA 167024 | || || | | || || ||||| ||||| ||||| ||||||||||||||| | ||| Sbjct 3777 GCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCCTAGGAA 3718 Query 167025 CTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAAT 167084 | | ||||| || |||||||| ||||| || ||||| ||||| || ||| | || ||| Sbjct 3717 ATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTGTTTTAAAT 3658 Query 167085 GAGGGTAT 167092 |||||||| Sbjct 3657 GAGGGTAT 3650 >seq4428 Length=185154 Score = 120 bits (132), Expect = 3e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 165222 TGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGA 165281 ||||||||||||| | | || ||||||||||| |||| |||| | || ||||| ||||| Sbjct 19699 TGATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 19640 Query 165282 ACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATC 165341 | ||||| ||||||||| | || |||||| | || || ||||| |||||||| || || Sbjct 19639 GTACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTC 19580 Query 165342 TCTTTTCTCTGCTATGCATGG 165362 || ||| |||| ||||||| Sbjct 19579 CCTATTCAGTGCTTTGCATGG 19559 >seq4131 Length=315116 Score = 105 bits (116), Expect = 8e-18 Identities = 136/188 (72%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 164969 CTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAAT 165028 ||||| || || ||| | ||||| || | ||||||||||||||| | ||||| | Sbjct 226340 CTTCTGCGGCGATTGGATTGCACTTTTACCTAATTTGGGAAGCTGCATATGTTGATGAGT 226399 Query 165029 GGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTT 165088 |||| ||||| | || ||||| || | |||| | |||||| | | ||||| Sbjct 226400 GGTTATACAATAGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACT------AGCTT 226453 Query 165089 GCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCG 165148 | | ||||||||||||||||||||| || | | || |||||||||||||||||| | Sbjct 226454 GTTGTATGGGTCGTGAGTGGGAACTGAGTTTCAGTCTGGGTATGCGTCCTTGGATTGTTG 226513 Query 165149 TAGCATAT 165156 | |||||| Sbjct 226514 TTGCATAT 226521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563628939073280