Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq4204 489 2e-133 seq3130 367 1e-96 seq3676 286 4e-72 seq4136 150 2e-31 seq203 113 5e-20 >seq4204 Length=279751 Score = 489 bits (542), Expect = 2e-133 Identities = 688/969 (71%), Gaps = 15/969 (2%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || | || ||||||||||| ||||||||||| Sbjct 216739 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 216680 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| | || |||||| |||| || | || || Sbjct 216679 ACCTTATTGACTGCAACTTCTGTATTTATTATCGCCTTCATCACAGCCCCTCTAGTAGAT 216620 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | || ||||| | |||| || | ||||| ||||| || |||||| Sbjct 216619 ATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAATATTATCTCT 216560 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || ||||| | ||||| || || ||||||||||| Sbjct 216559 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 216500 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| || | ||||||||||| || || || || |||||| | || || | | |||||| Sbjct 216499 GCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTC 216440 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || || |||||| | |||||||||| | |||| | |||||| Sbjct 216439 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 216380 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 ||||||||||| ||| ||||||| ||| | | |||| ||||| Sbjct 216379 CGTCCTTGGATTGCTGTTGCATATTTAGCTACTG---------------CTGTTTTCTTG 216335 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | |||||| | ||||| ||| |||||| || || |||||| |||| || || ||||| Sbjct 216334 ATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACT 216275 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||| ||| | |||||||| |||||||||||||| |||||||| ||||| || ||| Sbjct 216274 TTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATG 216215 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || ||| || ||||| ||||| | ||| Sbjct 216214 TTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 216155 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || || || || || || || | || |||| ||| Sbjct 216154 ACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAGATTT 216095 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || ||||| ||||| || || || ||||| || || ||||| |||||||| || | ||| Sbjct 216094 GGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTAATC 216035 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| |||||||| |||| | | ||||||||| | ||| | | ||| Sbjct 216034 TTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCT 215975 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 |||||| | || ||||| ||| | | |||||| | || ||||| || ||||| || ||| Sbjct 215974 GTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGA 215915 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| || | | ||| | ||| || || ||| ||||| || Sbjct 215914 TTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGAT 215855 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 | | ||| | || || || ||||||||||||||||| || |||||||| ||||||||| Sbjct 215854 ATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTC 215795 Query 170659 CCACTTGAC 170667 || || ||| Sbjct 215794 CCTCTAGAC 215786 >seq3130 Length=1765 Score = 367 bits (406), Expect = 1e-96 Identities = 502/700 (72%), Gaps = 2/700 (0%) Strand=Plus/Minus Query 169700 GGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCAT 169759 || |||| ||||| | ||||| | || | || ||||||||||| ||||||||||| Sbjct 1353 GGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTA 1294 Query 169760 GTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACA 169819 |||| | ||| | | ||||| | || ||||||||||| || || || || | Sbjct 1293 CCTTATTGACTGCAACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATA 1234 Query 169820 TCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTG 169879 | ||||| || | || ||||| | ||||| || | ||||| ||||| || ||||||| Sbjct 1233 TTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTG 1174 Query 169880 GTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAG 169939 |||| || |||| |||| || ||||| | ||||| || || ||||||||||| | Sbjct 1173 GTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTG 1114 Query 169940 CAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCC 169999 || || | ||||||||||| || || || || |||||| | || || | | |||||| Sbjct 1113 CATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCT 1054 Query 170000 TTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGC 170059 | | || | || || |||||| | |||||||||| | |||| | ||||||| Sbjct 1053 TACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGC 994 Query 170060 GTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAG 170119 |||||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 993 GTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGA 934 Query 170120 TGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACAT 170179 | |||||| | ||||| ||| |||||| || || |||||| |||| || || ||||| | Sbjct 933 TTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTT 874 Query 170180 TTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGG 170239 | ||||| ||| | |||||||| |||||||||||||| |||||||| ||||| || ||| Sbjct 873 TCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGT 814 Query 170240 CAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAA 170299 ||| || |||||| | ||||| || | || ||| || || || ||||| | |||| Sbjct 813 TAGGTGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAA 754 Query 170300 CATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCG 170359 | ||| | | ||||| || || || || || || || || |||| |||| ||| | Sbjct 753 CCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTG 694 Query 170360 GACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGG 170399 | ||||| ||||| || | || ||||| || || ||||| Sbjct 693 GTCAAGAGGAAGAGACTT--AATATTGTGGCCGCTCATGG 656 >seq3676 Length=461187 Score = 286 bits (316), Expect = 4e-72 Identities = 395/553 (71%), Gaps = 0/553 (0%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| ||| ||||| | ||||| | || | || |||| || ||| ||||||||||| Sbjct 288198 TGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTGATGATCCCT 288257 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 ||||| | ||| | | ||||| | || ||||||||||| || || || || Sbjct 288258 ACCTTATTAACTGCAACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGAT 288317 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | || ||||| | ||| || | ||||| ||||| || |||||| Sbjct 288318 ATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAATATTATCTCT 288377 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || ||||| | ||||| || || ||||||||||| Sbjct 288378 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 288437 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| || | ||||||||||| || || || || |||||| | || || | | |||||| Sbjct 288438 GCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTC 288497 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || || |||||| | |||||||||| | |||| | |||||| Sbjct 288498 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 288557 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 ||||||||||| ||| |||||||| ||||| || ||| || ||||| ||||| Sbjct 288558 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTG 288617 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | |||||| | ||||| ||| |||||| || || |||||| |||| || || ||||| Sbjct 288618 ATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACT 288677 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||| ||| | |||||||| | |||||||||||| |||||||| ||||| | ||| Sbjct 288678 TTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATCCATTTCGCATG 288737 Query 170239 GCAGGGGTTGCTG 170251 ||| || |||| Sbjct 288738 TTAGGTGTAGCTG 288750 >seq4136 Length=310402 Score = 150 bits (166), Expect = 2e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 170355 ATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACT 170414 ||| || ||||| ||||| || || || ||||| || || ||||| |||||||| || | Sbjct 3274 ATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATT 3215 Query 170415 TATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATT 170474 ||||||||||||||||| |||||||| |||| | | ||||||||| | ||| | | Sbjct 3214 AATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTG 3155 Query 170475 CCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAA 170534 ||||||||| | || ||||| ||| | | |||||| | || ||||| || ||||| || Sbjct 3154 GCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAA 3095 Query 170535 TGGATTTAACTTCAACCAGTC 170555 ||||| || |||||||| || Sbjct 3094 CGGATTCAATTTCAACCAATC 3074 >seq203 Length=971741 Score = 113 bits (124), Expect = 5e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 170478 TGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGG 170537 ||||||| | || ||||| ||| | | |||||| | || ||||| || ||||| || || Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 170538 ATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGA 170597 ||| || |||||||| || | || ||| | ||| || || ||| ||||| || Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 170598 CGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTT 170657 | | ||| | || || || ||||||||||||||||| || |||||||| |||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 170658 CCCACTTGAC 170667 ||| || ||| Sbjct 778002 CCCTCTAGAC 778011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582815054516800