Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq4204 540 1e-148 seq3130 412 4e-110 seq3676 306 4e-78 seq4136 181 1e-40 seq4428 136 5e-27 seq203 125 8e-24 >seq4204 Length=279751 Score = 540 bits (598), Expect = 1e-148 Identities = 703/973 (72%), Gaps = 17/973 (2%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||||||||| |||||||||||||| ||||| || | Sbjct 215793 GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTAGCACGGTTGATG 215852 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||| || ||||||||| | | | || ||||| || Sbjct 215853 ATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAAGTACAGATTGGTTGAAATTG 215912 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 ||||| || || || || ||||| || |||| ||| | ||||| |||||||| || || Sbjct 215913 AATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACT 215972 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||||||||| ||||| | ||||||| ||||| || |||||| ||| Sbjct 215973 ACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGG 216032 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || ||||| || ||||| || |||||||||||||| || || |||||| Sbjct 216033 AAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATAAGTCTCTTCCTCTTGA 216092 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || || ||||||| | || || ||||||| || ||||| | ||| | | ||| Sbjct 216093 CCAAATCTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAG 216152 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 216153 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCT 216212 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| ||||||||||||||||| || || |||||||| |||| ||| ||||| Sbjct 216213 AACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTG 216272 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || || || || | ||||| |||||||||||| ||||| || | |||||| Sbjct 216273 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAA 216332 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| |||||| | ||| | || |||||| ||||| ||| Sbjct 216333 ATCAAGAAAACAGCA---------------GTAGCTAAATATGCAACAGCAATCCAAGGA 216377 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | |||||||| ||||||||||| ||| | | |||||| Sbjct 216378 CGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 216437 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| || | |||||| || ||||| |||| ||| || || | | | Sbjct 216438 AAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGAT 216497 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || ||||||||||| || || || || | || || || ||| | |||| | |||| Sbjct 216498 GCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCA 216557 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 ||||| || || |||||||| || | | ||||| || || |||||||| ||||| ||| Sbjct 216558 CCAGAGATAATATTGTTTCCATAAAGTAAAGAACTAGAAACAGGCTCACGAATACCATCA 216617 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||| | || || | ||| || || || || ||||| ||| |||| | || Sbjct 216618 ATATCTACTAGAGGGGCTGTGATGAAGGCGATAATAAATACAGA-AGTTGCAGTCAATAA 216676 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 || || ||||| | | || ||||| || | || | |||||| | ||| || | Sbjct 216677 GGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTAT 216736 Query 84944 CCAATCACAGAAG 84956 ||| | |||||| Sbjct 216737 CCAGTTGCAGAAG 216749 >seq3130 Length=1765 Score = 412 bits (456), Expect = 4e-110 Identities = 504/684 (74%), Gaps = 4/684 (1%) Strand=Plus/Plus Query 84246 CCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTT 84305 || ||||| || ||||||||| ||| || || |||||||| || ||||||||| || Sbjct 656 CCATGAGCGGCCACAATATTA--AGTCTCTTCCTCTTGACCAAATCTGTAACCATCATTA 713 Query 84306 TGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATT 84365 || ||||||| || ||||| | ||| | | ||| || || | |||||||| || Sbjct 714 GCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGTATA 773 Query 84366 GCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATA 84425 ||| |||||| | ||||||||||||||||| || || ||||||||||| ||||||||| Sbjct 774 GCACTGAATAGGGAACCACCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATA 833 Query 84426 AGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGT 84485 |||||||| || || |||||||| |||| ||| ||||||| || || || || || | Sbjct 834 AGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAA 893 Query 84486 GGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCC 84545 ||||| |||||||||||| ||||| || | |||||| | | ||| ||||||| || Sbjct 894 GGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTAGCA 953 Query 84546 GCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAA 84605 |||||||| ||||| || || |||||| ||||| ||||||||||| ||||| | Sbjct 954 GCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTC 1013 Query 84606 AGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGT 84665 |||||||| ||||||||||| ||| | | |||||| | |||||| | |||| || Sbjct 1014 AGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGC 1073 Query 84666 TGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAG 84725 | |||||| || ||||| |||| ||| || || | | ||| ||||||||||| || || Sbjct 1074 TCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAA 1133 Query 84726 AAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCG 84785 || || | || || || ||| | |||| | ||||||||| || || |||||||| Sbjct 1134 AAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCA 1193 Query 84786 TACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCA 84845 || | | |||||||| || |||||||| ||||| |||||||| ||||| || || | Sbjct 1194 TAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTGCG 1253 Query 84846 ACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCC 84904 | ||| || || || || ||||| ||| |||| | || || || ||||| | | || Sbjct 1254 ATGAAGGCGATAATAAATACAGA-AGTTGCAGTCAATAAGGTAGGGATCATCAAAACACC 1312 Query 84905 AAACCAACCAACATAGATACGGTT 84928 ||||| || | || | |||||| Sbjct 1313 GAACCATCCGATGTAAAGACGGTT 1336 >seq3676 Length=461187 Score = 306 bits (338), Expect = 4e-78 Identities = 395/543 (73%), Gaps = 7/543 (1%) Strand=Plus/Minus Query 84354 GAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGA 84413 ||||||||||| ||| |||||| | || || || |||| || || |||||| || Sbjct 288785 GAACCATGCATAGCACTGAATAGGGAACCGCCAAA-----CAGCTACACCTAACATGCGA 288731 Query 84414 AAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCT 84473 || ||||||||||||||||| || || ||||||| |||| ||| ||||||| || || Sbjct 288730 AATGGATGCATAAGGATGTTGTGCTCTACCTGGAATACAATCATAAAGTTGAAAGTACCA 288671 Query 84474 GAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAAT 84533 || || || | ||||| |||||||||||| ||||| || | |||||| | | ||| Sbjct 288670 GATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAA 288611 Query 84534 ACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCG 84593 ||||||| || ||||||| ||||| || || |||||| ||||| ||||||||||| Sbjct 288610 ACAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCC 288551 Query 84594 AGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGA 84653 ||||| | |||||||| ||||||||||| ||| | | |||||| | |||||| Sbjct 288550 AGACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGT 288491 Query 84654 AAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCC 84713 | |||| || | |||||| || ||||| |||| ||| || || | | ||| |||||| Sbjct 288490 AGAACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCC 288431 Query 84714 CAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATG 84773 ||||| || || || || | || || || ||| | |||| | ||||||||| || Sbjct 288430 CAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATA 288371 Query 84774 ATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACT 84833 || |||||||| || | | |||| | || |||||||| ||||| |||||||| ||| Sbjct 288370 ATATTGTTTCCATAAAGTAAAGAATCGAAAACAGGCTCACGAATACCATCAATATCTACT 288311 Query 84834 GGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAAT 84892 || || || | | ||| || || || || ||||| ||| |||| | || || || || Sbjct 288310 GGAGGGGCTGCGATGAAGGCGATAATAAATACAGA-AGTTGCAGTTAATAAGGTAGGGAT 288252 Query 84893 CAT 84895 ||| Sbjct 288251 CAT 288249 >seq4136 Length=310402 Score = 181 bits (200), Expect = 1e-40 Identities = 186/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 84047 ATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAA 84106 ||| ||||| ||||| | ||| || ||||||||| || | | || ||||| || || Sbjct 3031 ATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTGAA 3090 Query 84107 TCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCAC 84166 ||| || || || || ||||| || |||| ||| | ||||| |||||||| || || || Sbjct 3091 TCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTAC 3150 Query 84167 TGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAA 84226 ||||||||||||||||| ||||| | ||||||| ||||| || |||||| ||||| Sbjct 3151 AGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAA 3210 Query 84227 GATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACC 84286 ||| | || || ||||| || ||||| || |||||||||||||| || || |||||||| Sbjct 3211 GATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATAAGTCTCTTCCTCTTGACC 3270 Query 84287 GAA 84289 || Sbjct 3271 AAA 3273 >seq4428 Length=185154 Score = 136 bits (150), Expect = 5e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 84313 CATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGA 84372 ||||||| || ||||| | ||| | | ||| || || | |||||||||| ||| || Sbjct 19515 CATTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCAAAGCACTGA 19574 Query 84373 ATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGT 84432 |||| | || |||||||||||||| || || ||||||||||| | |||||||||||||| Sbjct 19575 ATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGAATGCATAAGGATGT 19634 Query 84433 TATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGC 84492 | | || |||||||| |||| ||| ||||||| || || || || | | ||||| | Sbjct 19635 TGTACTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTTCTAAAGGCATAC 19694 Query 84493 CATCA 84497 ||||| Sbjct 19695 CATCA 19699 >seq203 Length=971741 Score = 125 bits (138), Expect = 8e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||||||||| |||||||||||||| ||||| || | Sbjct 778004 GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTAGCACGGTTGATG 777945 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||| || ||||||||| || | | || ||||| || Sbjct 777944 ATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTG 777885 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 ||||| || || || || ||||| || |||| ||| | ||||| |||||||| || || Sbjct 777884 AATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACT 777825 Query 84165 AC 84166 || Sbjct 777824 AC 777823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571241308759760