Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4413 118 1e-21 >seq4413 Length=1061291 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| ||| |||| | | ||| || ||||| || Sbjct 4140 CCACCTTGATCAACATAACGTGCAGTATCGTTGAAAACACGCAGCATGGGAACAATTCCG 4081 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||| |||||| ||||||||| ||| ||||||| ||||| |||||| Sbjct 4080 TTAGATGCTCCATTCGTTCCCCGAATATAACTCCCAGTAGCTCTAATATTGTGAATTGAG 4021 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| |||||| | || |||||||||||| Sbjct 4020 ACACCAATTCCTCCAGCACATTTGCTTATGGCAGCACATTCTGATAGAGTATCATAAATT 3961 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 3960 CCCTCGATACTATCATCTTTCAT 3938 Score = 102 bits (112), Expect = 9e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | ||| || | ||||| ||||||||| ||||||| || || | || | Sbjct 3830 AGTGCCAGCATTGAAAAGGGTTGGTGATGCATGAGTAAACCAGCGCTGAGACATCATGTG 3771 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 |||||| ||| |||| || ||||| | ||| || || || || || || | ||||| Sbjct 3770 GTATGTTCTGATAGCAGACTCAATATCATCCTTG-TGAATCCCAATGGAAACTCTCATTA 3712 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||||| || |||||||| |||| || | | |||||| ||||| ||| | || | Sbjct 3711 GCATATGCTGTGGTCTTTCCACAACCTTTCCACCAACTTTCAACAGATAAGATCTCTCAA 3652 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 || |||||||||||||||| ||| ||| || |||||| ||| ||| Sbjct 3651 GGGTCTTAAAACCAAAATAGTCGTAGTCAAAATCTCTATCATAAATTATT 3602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562077026800080