Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4346 113 4e-19 seq4228 109 4e-18 seq492 105 5e-17 seq4137 102 7e-16 seq149 100 2e-15 seq4069 98.7 8e-15 seq3785 98.7 8e-15 seq4493 96.9 3e-14 seq4234 91.5 1e-12 seq4301 87.8 1e-11 >seq4346 Length=1110530 Score = 113 bits (124), Expect = 4e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || ||||| | ||||| | ||||| |||||||| || ||||||||||| | ||| | Sbjct 474280 AAATTACGAAAGCAGTTGTTACTGTTCCAGCATACTTCAATGACTCACAGAGGACAGCAA 474339 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||||||||| || ||| | | ||||| || ||||| ||||| || |||| Sbjct 474340 CAAAAGATGCTGGACGTATAGCAGGATTGGAAGTTCTCCGCATTATAAATGAGCCAACTG 474399 Query 550509 CTGCTGCACTTGCATATGGACTTGA 550533 |||| | ||||| ||||| |||| Sbjct 474400 CTGCATCCCTTGCTTATGGTTTTGA 474424 >seq4228 Length=269956 Score = 109 bits (120), Expect = 4e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | ||||| || || ||||| |||||||| |||||||| ||| | || | Sbjct 128774 AAGTCACAAAGGCAGTGATCACAGTACCTGCATATTTCAATGACTCGCAAAGGACCGCAA 128715 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || |||||||| || | ||||| ||||| || ||||| ||||| | Sbjct 128714 CAAAAGATGCTGGCCGGATTGCTGGCCTGGAAGTTCTCCGTATCATAAATGAGCCTACCG 128655 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 | || || | ||||||||| |||| || Sbjct 128654 CAGCATCATTGGCATATGGATTTGAAAA 128627 >seq492 Length=908872 Score = 105 bits (116), Expect = 5e-17 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | |||||| | ||||| || ||||| || ||||||||||| | ||| | Sbjct 639454 AAATTACAAAAGCAGTAGTTACTGTTCCGGCATACTTCAATGACTCACAGAGAACAGCAA 639513 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| ||||| || ||| | | ||||| || ||||| ||||| || |||| Sbjct 639514 CAAAAGATGCTGGGCGTATAGCAGGATTGGAAGTTCTCCGCATTATAAATGAGCCAACTG 639573 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 |||| | ||||| ||||| |||| || Sbjct 639574 CTGCATCCCTTGCTTATGGTTTTGAGAA 639601 >seq4137 Length=326916 Score = 102 bits (112), Expect = 7e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || || || || |||||||| || | || || || || |||| Sbjct 320820 ATGCCGTTGTCACTGTTCCTGCCTACTTCAATGACTCCCAGAGGCAGGCCACCAAGGATG 320761 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| |||||||| |||||||| | || || ||||||||||| ||||| || || Sbjct 320760 CTGGAGTGATTGCTGGTCTTAATGTCATGCGGATCATCAATGAACCGACTGCAGCGGCGA 320701 Query 550518 TTGCATATGGACTTGATAA 550536 |||||||||| ||||| || Sbjct 320700 TTGCATATGGTCTTGACAA 320682 >seq149 Length=105794 Score = 100 bits (110), Expect = 2e-15 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | ||||| || || ||||| |||||||| |||||||| ||| | || | Sbjct 100288 AAGTCACAAAGGCAGTGATCACAGTACCTGCATATTTCAATGACTCGCAAAGGACTGCAA 100347 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || |||||||| | | ||||| ||||| || ||||| ||||||| Sbjct 100348 CAAAAGATGCTGGCCGGATTGCTGGCTTGGAAGTTCTCCGTATCATAAATGAGCCTACTG 100407 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 | || | | |||||||| |||| || Sbjct 100408 CAGCATCCTTGGCATATGGGTTTGAAAA 100435 >seq4069 Length=334958 Score = 98.7 bits (108), Expect = 8e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || || ||||| || || |||||||| | || || || || |||| Sbjct 6745 ATGCTGTTGTCACAGTTCCTGCATACTTCAACGACTCACAGAGGCAGGCCACCAAGGATG 6804 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| |||| ||| || |||||| | || || |||||||| || ||||||||||| Sbjct 6805 CTGGAGTCATTGGTGGTCTCAATGTTATGCGGATCATCAATGAGCCGACTGCTGCTGCCA 6864 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| ||||| || Sbjct 6865 TTGCCTATGGTCTTGACAA 6883 >seq3785 Length=445553 Score = 98.7 bits (108), Expect = 8e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| ||||| ||||| |||| || || || || || |||||| Sbjct 253748 GCTGTGATTACAGTTCCAGCTTATTTCAATGATGCACAGCGCCAGGCAACCAAGGATGCT 253689 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || |||||| |||||||| |||| | | || || |||||||| ||||||||||| || Sbjct 253688 GGTCGTATTTCTGGACTTGATGTCCAAAGGATCATAAATGAACCAACTGCTGCTGCTCTG 253629 Query 550520 GCATATGGA 550528 | |||||| Sbjct 253628 TCTTATGGA 253620 >seq4493 Length=164055 Score = 96.9 bits (106), Expect = 3e-14 Identities = 159/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||| ||||| |||||||||||||| ||| | ||| || ||||| ||||| || Sbjct 95969 CCTGAGGCGGAGGACAAGATGAAGGGTTGACTCCTTCTGG--ATGTTGTAGTCAGCAAGG 95912 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || |||||||| || || | ||||| || || ||||| Sbjct 95911 GTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGAATA 95852 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 || || || || || || || || || ||||| || |||| || | || || Sbjct 95851 CCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAG-AAGACTCCACCTC 95793 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || | ||| || ||||| ||||| || ||||| || ||||| Sbjct 95792 GAGGGTGATAGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 95748 >seq4234 Length=244235 Score = 91.5 bits (100), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 390803 CAGTATTAATACCATTATCACCATATACACATTGAATTA-ATTTGTCATTGGCATTTCTT 390861 ||| || || |||| || ||||| | ||||||| | || | || || ||||||| Sbjct 219533 CAGCATCCATGCCATCTTCTCCATACAAGAATTGAATGACATCTCCCAA-GGAATTTCTT 219591 Query 390862 ACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTTTGGATA 390921 || ||||||||||||| || | || ||||| | || || | | || |||||| Sbjct 219592 ACAGTACCATCATACTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCGCTGGATA 219651 Query 390922 TAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACT 390981 || ||||| || | |||||| | || |||| ||| | ||||||||| || ||||| | Sbjct 219652 TATCCAGTTTCAGAAGTTTTCACAGCGGTATCAATCAGACCTTCTCTACCACCCATAGCA 219711 Query 390982 TGGAAGAAAAATTC 390995 || ||||||||||| Sbjct 219712 TGAAAGAAAAATTC 219725 >seq4301 Length=2066707 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| ||||| | ||||| || ||||| || |||||| Sbjct 1735844 GCTGTTATCACTGTCCCAGCTTATTTCAATGATGCCCAACGCCAGGCTACCAAGGATGCT 1735785 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | || |||||||| | || | | ||||||||||| || ||||| || || ||| Sbjct 1735784 GGTAGGATCGCTGGACTGGAGGTGATGAGGATTATCAATGAGCCCACTGCCGCAGCTCTT 1735725 Query 550520 GCATATGG 550527 | ||||| Sbjct 1735724 TCGTATGG 1735717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029056856245780