Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq4204 466 5e-127 seq3130 343 4e-90 seq3676 286 1e-72 seq4136 154 4e-33 seq203 102 2e-17 seq4428 96.9 1e-15 >seq4204 Length=279751 Score = 466 bits (516), Expect = 5e-127 Identities = 691/976 (71%), Gaps = 19/976 (2%) Strand=Plus/Minus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || || |||||||| || | ||||||||||| || | ||||| || Sbjct 216739 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 216680 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | || ||| | ||| ||||| | ||||||||| |||| || | ||||| Sbjct 216679 ACCTTATTGACTGCAACTTC-TGTATTTATTATCGCCTTCATCACAGCCCCTCTAGTAGA 216621 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| ||||| || |||||||| ||||| | || ||| | || ||||||||||| || || Sbjct 216620 TATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAATATTATCTC 216561 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || || | | || | ||| || |||||| | || |||||||| || |||||||| Sbjct 216560 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 216501 Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109 || | | || |||||| ||||||||||||| || ||| | || ||| | | ||||| Sbjct 216500 TGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTT 216441 Query 26110 CTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAAT 26169 |||| | || ||||| ||| || | |||||||||| || | | || || || Sbjct 216440 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTAT 216381 Query 26170 GAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTT 26229 | | || ||||| |||||||||| ||| ||| || || ||||| Sbjct 216380 GCGTCCTTGGATTGCTGTTGCATATTTAGCT--ACT-------------GCTGTTTTCTT 216336 Query 26230 AGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTAC 26289 |||||||| | || ||||| ||||| |||||| |||||| | || || |||||||| Sbjct 216335 GATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 216276 Query 26290 TTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATAT 26349 ||| ||||||||| | |||||||| ||||| || || || || ||||| ||||| || || Sbjct 216275 TTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACAT 216216 Query 26350 GGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGT 26409 | ||||| ||||| || ||||| || | || ||| ||||||||| || ||||| Sbjct 216215 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 216156 Query 26410 TACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTT 26469 || || | || ||||| || || | | || ||| | || || | || Sbjct 216155 AACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAGATT 216096 Query 26470 TGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAAT 26529 ||| ||||| |||||||| ||||||||||| || || || || |||||||| ||||||| Sbjct 216095 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTAAT 216036 Query 26530 TTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCC 26589 || || ||||| |||||||| ||| |||||| | || ||||| | ||| ||||||| Sbjct 216035 CTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 215976 Query 26590 GGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGG 26649 || || || || ||| | || || | ||||| | || ||||| || |||||||| || Sbjct 215975 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 215916 Query 26650 TTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTG 26708 || || || ||||| || ||| | ||| | || | | || || ||| ||||||| Sbjct 215915 ATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTA-ATACTTGGGCTG 215857 Query 26709 ATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACT 26768 || | | ||||| ||||| || || | ||||| |||||||| ||||||||||| |||| Sbjct 215856 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 215797 Query 26769 TTCCACTTGACTTAGC 26784 | || || ||| |||| Sbjct 215796 TCCCTCTAGACCTAGC 215781 >seq3130 Length=1765 Score = 343 bits (380), Expect = 4e-90 Identities = 496/696 (71%), Gaps = 4/696 (1%) Strand=Plus/Minus Query 25817 ACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTA 25876 || || || || |||||||| || | ||||||||||| || | ||||| || |||| Sbjct 1348 ACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTA 1289 Query 25877 CTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGA 25935 | | || ||| | ||| ||||| | |||||||||||||| || || |||||||| || Sbjct 1288 TTGACTGCAACTTC-TGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGA 1230 Query 25936 TGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGC 25995 ||| || |||||||| ||||| || || ||| | || ||||||||||| || || || || Sbjct 1229 TGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGC 1170 Query 25996 AGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCAC 26055 | | || | ||| || |||||| | || |||||||| || |||||||||| | Sbjct 1169 CATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATC 1110 Query 26056 ACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAAT 26115 | || |||||| ||||||||||||| || ||| | || ||| | | ||||||||| | Sbjct 1109 TGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACT 1050 Query 26116 AGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACC 26175 || ||||| ||| || | |||||||||| || | | || || ||| | || Sbjct 1049 TGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCC 990 Query 26176 ATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTA 26235 ||||| |||||||||| |||| || | | || ||| || || ||||| |||| Sbjct 989 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 930 Query 26236 TCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAA 26295 |||| | || ||||| ||||| |||||| |||||| | || || ||||||||||| || Sbjct 929 TCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAA 870 Query 26296 CTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGG 26355 ||||||| | |||||||| ||||| || || || || ||||| ||||| || ||| || Sbjct 869 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 810 Query 26356 TGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTC 26415 ||| ||||| || |||||||| | || ||| |||||| || || ||||| || || Sbjct 809 TGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTC 750 Query 26416 CTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCA 26475 | || ||||| || || | | || ||| |||| || | ||||| || Sbjct 749 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCA 690 Query 26476 AGATGAAGAGACATATAATATTGTCGCTGCACACGG 26511 ||| |||||||| ||||||||| || || || || Sbjct 689 AGAGGAAGAGAC--TTAATATTGTGGCCGCTCATGG 656 >seq3676 Length=461187 Score = 286 bits (316), Expect = 1e-72 Identities = 414/582 (71%), Gaps = 7/582 (1%) Strand=Plus/Plus Query 25820 AGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTC 25879 || || || |||||||| || | ||||||| || || | ||||| || |||| | Sbjct 288207 AGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTGATGATCCCTACCTTATTA 288266 Query 25880 GCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGG 25938 | || ||| | ||| ||||| | |||||||||||||| || || |||||||| ||||| Sbjct 288267 ACTGCAACTTC-TGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGG 288325 Query 25939 CATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGT 25998 || |||||||| |||| || || ||| | || ||||||||||| || || || || | Sbjct 288326 TATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCAT 288385 Query 25999 CGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACT 26058 | || | ||| || |||||| | || |||||||| || |||||||||| | | Sbjct 288386 TATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGT 288445 Query 26059 GGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGG 26118 || |||||| ||||||||||||| || ||| | || ||| | | ||||||||| | || Sbjct 288446 TGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG 288505 Query 26119 AGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATG 26178 ||||| ||| || | |||||||||| || | | || || ||| | || || Sbjct 288506 TGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTG 288565 Query 26179 GATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCC 26238 ||| |||||||||| |||| || | | | ||| || || ||||| ||||||| Sbjct 288566 GATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATTTATCC 288625 Query 26239 TTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTT 26298 | | || ||||| ||||| |||||| |||||| | || || ||||||||||| ||||| Sbjct 288626 TATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTT 288685 Query 26299 TATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGT 26358 |||| | |||||||| | ||| || || || || ||||| ||||| | ||| ||||| Sbjct 288686 TATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGT 288745 Query 26359 TGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGG 26400 |||| || || || | || ||| ||||||||| || Sbjct 288746 AGCTG-----TTTGGCGGTTCCCTATTCAGTGCTATGCATGG 288782 >seq4136 Length=310402 Score = 154 bits (170), Expect = 4e-33 Identities = 164/215 (76%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 26464 TAAG-TTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGA 26522 |||| ||||| ||||| |||||||| ||||||||||| || || || || |||||||| Sbjct 3278 TAAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCC 3219 Query 26523 GATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTA 26582 ||||||| || || ||||| |||||||| ||| |||||| | || ||||| | ||| Sbjct 3218 GATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTG 3159 Query 26583 CTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACC 26642 ||||||| || || || || ||| | || || | ||||| | || ||||| || |||| Sbjct 3158 CTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 3099 Query 26643 TAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT 26677 |||| || || || || ||||| || ||||| ||| Sbjct 3098 TAAACGGATTCAATTTCAACCAATCTGTAGTTGAT 3064 >seq203 Length=971741 Score = 102 bits (112), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 26591 GTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGT 26650 || || || || ||| | || || | ||||| | || ||||| || |||||||| || Sbjct 777823 GTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGA 777882 Query 26651 TTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTGA 26709 || || || ||||| || ||||| ||| | || | | || || ||| |||||||| Sbjct 777883 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAA-TACTTGGGCTGA 777941 Query 26710 TGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTT 26769 | | | ||||| ||||| || || | ||||| |||||||| ||||||||||| ||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 26770 TCCACTTGACTTAGC 26784 || || ||| |||| Sbjct 778002 CCCTCTAGACCTAGC 778016 >seq4428 Length=185154 Score = 96.9 bits (106), Expect = 1e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 26260 TGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGA 26319 |||||| |||||| | | || ||||||||||| ||||||||| | |||||||| ||||| Sbjct 19699 TGATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 19640 Query 26320 ACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGC 26379 | || || || ||||| |||| || ||| ||||| ||||| || ||||| || | Sbjct 19639 GTACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTC 19580 Query 26380 TCTTTTCGCTGCTATGCACGG 26400 || ||| |||| |||| || Sbjct 19579 CCTATTCAGTGCTTTGCATGG 19559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146718520975728