Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq4204 484 2e-132 seq3130 389 1e-103 seq3676 315 2e-81 seq4136 141 3e-29 seq4428 111 5e-20 seq203 107 6e-19 >seq4204 Length=279751 Score = 484 bits (536), Expect = 2e-132 Identities = 698/983 (71%), Gaps = 21/983 (2%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || ||||||||||| || ||||| || ||||| |||||||| || | Sbjct 215777 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 215836 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 | |||||||| | || ||||||||||| | || | || | | ||||| || Sbjct 215837 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAAGTAC 215896 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || ||||| || || ||||||||||| | || | ||| || Sbjct 215897 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 215956 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 | ||| || | || ||||||||||||| |||||| |||||| || || || Sbjct 215957 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 216016 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 ||| |||||||| |||||||| | || |||||||| |||||||| || ||||| ||||| Sbjct 216017 AAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATA 216076 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 |||||||| ||||| || ||| | || || | || ||||||| |||| ||||| Sbjct 216077 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTC 216136 Query 36329 ACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 36385 | || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 216137 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 216193 Query 36386 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 36445 |||||| || || ||||| | ||| || || |||||||||||||| ||||| |||||||| Sbjct 216194 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTG 216253 Query 36446 AAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 36505 || |||| |||||| |||||||| || || || || | ||||||||||||||||||||| Sbjct 216254 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 216313 Query 36506 CCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 36565 ||||| |||| ||| || | ||||| |||||| | ||| |||| Sbjct 216314 TCCTTGACCAATAGGATAAATCAAGAAAACAGCA---------------GTAGCTAAATA 216358 Query 36566 AGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAA 36625 || ||| ||||| || | |||||| || | |||| |||||||| | || |||| Sbjct 216359 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 216418 Query 36626 GTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATA 36685 ||| | | ||||| | ||||| | ||||| || | ||| || || || || || Sbjct 216419 ATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTGTA 216478 Query 36686 TAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTT 36745 ||||||||| || | | |||||||||||| |||||||| ||||| | ||||| || Sbjct 216479 TAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGC 216538 Query 36746 CGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGAC 36805 || | || | || || |||||||| || ||||||||||| ||||| | | || || Sbjct 216539 AGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACTAGAAAC 216598 Query 36806 AGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGC 36865 |||||||||||||||||| ||||| || |||| || | | || || || | |||| | Sbjct 216599 AGGCTCACGAATACCATCAATATCTACTAGAGGGGCTGTGATGAAGGCGATAATAAATAC 216658 Query 36866 TGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCG 36925 | ||| || || | | ||||||||| | || || ||||| || | || || || Sbjct 216659 AGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACG 216718 Query 36926 GTTGTTTGTACTTGTAACCCAGT 36948 ||| | || || || | ||||| Sbjct 216719 GTTTTCGGTGCTAGTTATCCAGT 216741 >seq3130 Length=1765 Score = 389 bits (430), Expect = 1e-103 Identities = 501/686 (73%), Gaps = 8/686 (1%) Strand=Plus/Plus Query 36246 CCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTC 36305 |||||||| || ||||| ||| |||||||| ||||| || ||| | || |||| || Sbjct 656 CCATGAGCGGCCACAATATTAA--GTCTCTTCCTCTTGACCAAATCTGTAACCATCATTA 713 Query 36306 TGAGATTCAAGCCCAGTTGTTTCACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGC 36362 ||||||| |||| ||||| | || || | |||| || |||| || || Sbjct 714 GCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGT 770 Query 36363 ATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGC 36422 |||||| ||||| | ||||||||||| || || ||||| | ||| || || |||||| Sbjct 771 ATAGCACTGAATAGGGAACCACCGAATACACCAGCTACACCTAACATGTGAAATGGATGC 830 Query 36423 ATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCA 36482 |||||||| ||||| |||||||| || |||| |||||| |||||||| || || || || Sbjct 831 ATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCT 890 Query 36483 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAAT 36542 | ||||||||||||||||||||| ||||| |||| ||| || | ||||| |||||| Sbjct 891 AAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTA 950 Query 36543 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAA 36602 || ||||||||||| |||||||| || ||| ||||| || | |||||| || | || Sbjct 951 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 1010 Query 36603 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATG 36662 || |||||||| | || |||| ||| | | ||||| | ||||| | ||||| Sbjct 1011 CTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 1070 Query 36663 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 36722 || | ||| || || || || ||||||||||| || | | |||||||||||| |||||| Sbjct 1071 AGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGG 1130 Query 36723 TAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTT 36782 || ||||| | ||||| || || | || | || || |||||||| || |||||| Sbjct 1131 TAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTT 1190 Query 36783 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 36842 ||||| ||||| | || || |||||||||||||||||||| ||||| || ||||| || Sbjct 1191 CCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCT 1250 Query 36843 GCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACC 36902 || | || || || | |||| | | ||| || || | | ||||||||| | || Sbjct 1251 GCGATGAAGGCGATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACA 1310 Query 36903 CCAAACCACCCCACATAGAGGCGGTT 36928 || ||||| || | || || ||||| Sbjct 1311 CCGAACCATCCGATGTAAAGACGGTT 1336 >seq3676 Length=461187 Score = 315 bits (348), Expect = 2e-81 Identities = 413/572 (72%), Gaps = 5/572 (1%) Strand=Plus/Minus Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || ||||||||| ||||| | || || || | || ||||| | ||| | || Sbjct 288782 CCATGCATAGCACTGAATAGGGAACCGCCAAACA-----GCTACACCTAACATGCGAAAT 288728 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 |||||||||||||| ||||| ||| |||| || |||| |||||| |||||||| || || Sbjct 288727 GGATGCATAAGGATGTTGTGCTCTACCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 288668 Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 36536 || || | ||||||||||||||||||||| ||||| |||| ||| || | ||||| ||| Sbjct 288667 ATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACA 288608 Query 36537 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGT 36596 ||| || |||||||||| |||||||| || ||| ||||| || | |||||| || Sbjct 288607 GCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGA 288548 Query 36597 CTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAAC 36656 | |||| |||||||| | || |||| ||| | | ||||| | ||||| | Sbjct 288547 CGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGA 288488 Query 36657 ACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAG 36716 ||||| || | ||| || || || || ||||||||||| || | | |||||||||||| Sbjct 288487 ACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAA 288428 Query 36717 ATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATG 36776 |||||||| ||||| | ||||| || || | || | || || |||||||| || Sbjct 288427 ATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATA 288368 Query 36777 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 36836 ||||||||||| ||||| | | | |||||||||||||||||||| ||||| || ||| Sbjct 288367 TTGTTTCCATAAAGTAAAGAATCGAAAACAGGCTCACGAATACCATCAATATCTACTGGA 288308 Query 36837 GGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATT 36896 || || || | || || || | |||| | | ||| ||||| | | ||||||||| Sbjct 288307 GGGGCTGCGATGAAGGCGATAATAAATACAGAAGTTGCAGTTAATAAGGTAGGGATCATC 288248 Query 36897 AGTACCCCAAACCACCCCACATAGAGGCGGTT 36928 | || | |||| || | || || ||||| Sbjct 288247 AAAACATCGGACCATCCGATGTAAAGACGGTT 288216 >seq4136 Length=310402 Score = 141 bits (156), Expect = 3e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 |||||| || || || ||||| || || ||||| || || ||||||||||| | || Sbjct 3064 ATCAACTACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACC 3123 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 | ||| || | ||| || | || ||||||||||||| |||||| |||||| || Sbjct 3124 TAAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACG 3183 Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259 || ||||| |||||||| |||||||| | || |||||||| |||||||| || || Sbjct 3184 AGAGTTGTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCAC 3243 Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAAT 36290 ||| ||||| |||||||| ||||| || ||| Sbjct 3244 AATATTATAAGTCTCTTCCTCTTGACCAAAT 3274 >seq4428 Length=185154 Score = 111 bits (122), Expect = 5e-20 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || |||| |||| ||||| | || |||||||| || || ||||| | ||| || || Sbjct 19559 CCATGCAAAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAAT 19618 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 | |||||||||||| |||| |||||||| || |||| |||||| |||||||| || || Sbjct 19619 GAATGCATAAGGATGTTGTACTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 19678 Query 36477 ATACCAAGAGGCATACCATCA 36497 || | | ||||||||||||| Sbjct 19679 ATTTCTAAAGGCATACCATCA 19699 >seq203 Length=971741 Score = 107 bits (118), Expect = 6e-19 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || ||||||||||| || ||||| || ||||| |||||||| || | Sbjct 778020 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 777961 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 | |||||||| | || ||||||||||| | || | || | | |||||| || Sbjct 777960 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 777901 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGT 36130 || || ||||| || || ||||| || || ||||||||||| Sbjct 777900 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGT 777859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150446320786788