Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq4204 506 6e-139 seq3130 354 2e-93 seq3676 295 2e-75 seq4136 154 4e-33 seq203 136 1e-27 seq4428 132 1e-26 seq4148 82.4 2e-11 >seq4204 Length=279751 Score = 506 bits (560), Expect = 6e-139 Identities = 706/991 (71%), Gaps = 23/991 (2%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 215777 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 215836 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307 || |||||||| | || ||| |||||||| || | | ||| |||| |||| Sbjct 215837 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTA---TCAAG 215893 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || || || ||||| || || ||||| || || ||||||||||| || || | || Sbjct 215894 TACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGC 215953 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427 || | ||| || | || || ||||||| ||||| |||||| |||||| ||| || Sbjct 215954 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 216013 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 |||||| |||||||| |||||||| | || |||||||| |||||||| || ||||| || Sbjct 216014 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATT 216073 Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGT 5547 ||| || ||||||||||| || ||| | || || | || ||| | |||| || Sbjct 216074 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCATTTTCAGTGGT 216133 Query 5548 TTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACC 5607 ||| | || | ||| || || | |||||||||||| ||| | | || || Sbjct 216134 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 216193 Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667 |||||| ||||| ||||| | |||||| || |||||||||||||| ||||| |||||||| Sbjct 216194 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTG 216253 Query 5668 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACT 5727 |||||| | ||||||||| ||||||||||| || || | ||||||||||||| |||||| Sbjct 216254 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 216313 Query 5728 TCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAAT 5786 ||| || || | ||| || | || || || | |||| ||| ||| Sbjct 216314 TCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTA----------------GCTAAAT 216357 Query 5787 ATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCA 5846 |||| || |||||| || ||||| || | | | |||| |||||||| | || |||| Sbjct 216358 ATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCA 216417 Query 5847 AGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGT 5906 ||| || | ||||| | |||||| | || | || | || || || ||||||| Sbjct 216418 TATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTGT 216477 Query 5907 AAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGT 5966 | | ||| ||||| | | || |||||||| || || || ||||| || || || || Sbjct 216478 ATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCG 216537 Query 5967 TGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGA 6026 || | || | || ||| || || || || ||||||||||| |||| ||| | | | Sbjct 216538 CAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACTAGAAA 216597 Query 6027 CGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATG 6086 | || ||||| || || || || || ||| | || || | | ||| || | |||||| Sbjct 216598 CAGGCTCACGAATACCATCAATATCTACTAGAGGGGCTGTGATGAAGGCGATAATAAATA 216657 Query 6087 CAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGC 6146 ||| |||||| || || | | || ||||| || ||||| ||||| || | || || | Sbjct 216658 CAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGAC 216717 Query 6147 GGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 |||| | ||||||||| | ||||| ||||| Sbjct 216718 GGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 216748 >seq3130 Length=1765 Score = 354 bits (392), Expect = 2e-93 Identities = 503/704 (71%), Gaps = 4/704 (1%) Strand=Plus/Plus Query 5468 CCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTC 5527 |||||||| || ||||| ||| || ||||||||||| || ||| | || |||| || Sbjct 656 CCATGAGCGGCCACAATATTAA--GTCTCTTCCTCTTGACCAAATCTGTAACCATCATTA 713 Query 5528 TGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATA 5587 ||| | |||| ||||| | || | ||| || || | ||||| ||| Sbjct 714 GCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGTATA 773 Query 5588 GCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATA 5647 ||| ||| | | ||||||||||| ||||| ||||| | |||||| || ||||||||| Sbjct 774 GCACTGAATAGGGAACCACCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATA 833 Query 5648 AGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGA 5707 ||||| ||||| |||||||||||||| | ||||||||| ||||||||||| || || | | Sbjct 834 AGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAA 893 Query 5708 GGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGC 5766 |||||||||||| ||||||||| || || | ||| || | || || || | |||| || Sbjct 894 GGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTA-GC 952 Query 5767 TGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACT 5826 || ||||| || ||||||||||| || |||||| || ||||| || | | | |||| Sbjct 953 AGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACT 1012 Query 5827 AAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAG 5886 |||||||| | || |||| ||| || | ||||| | |||||| | || | || Sbjct 1013 CAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAG 1072 Query 5887 TTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATA 5946 | || || || |||||||| | ||| ||||| | | || |||||||| || || || Sbjct 1073 CTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTA 1132 Query 5947 GAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCC 6006 ||||| || || || || || | || | || ||| || || || || |||||||| Sbjct 1133 AAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCC 1192 Query 6007 ATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGC 6066 ||| |||| ||| || | || || ||||| || || || || || ||||| || || || Sbjct 1193 ATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTGC 1252 Query 6067 TACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACC 6126 | ||| || | |||||| ||| |||||| || || | | || ||||| || ||||| Sbjct 1253 GATGAAGGCGATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACC 1312 Query 6127 AAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGT 6170 ||||| || | || || ||||| | ||||||||| | || || Sbjct 1313 GAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCGGT 1356 >seq3676 Length=461187 Score = 295 bits (326), Expect = 2e-75 Identities = 427/600 (71%), Gaps = 7/600 (1%) Strand=Plus/Minus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||||||||||| ||| | | || || || |||| ||||| | |||| | || Sbjct 288782 CCATGCATAGCACTGAATAGGGAACCGCCAAA-----CAGCTACACCTAACATGCGAAAT 288728 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 |||||||||||||| ||||| ||| |||||||||| | ||||||||| ||||||||||| Sbjct 288727 GGATGCATAAGGATGTTGTGCTCTACCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 288668 Query 5699 ATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACT 5758 || || | ||||||||||||| ||||||||| || || | ||| || | || || || Sbjct 288667 ATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACA 288608 Query 5759 G-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAA 5817 | ||||| | | ||||| || ||||||||||| || |||||| || ||||| || | Sbjct 288607 GCAGTAG-CAACTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAG 288549 Query 5818 TCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAA 5877 | | |||| |||||||| | || |||| ||| || | ||||| | |||||| | Sbjct 288548 ACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAG 288489 Query 5878 GACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCA 5937 || | || | || || || |||||||| | ||| ||||| | | || |||||||| Sbjct 288488 AACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCA 288429 Query 5938 GATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGAT 5997 || || || ||||| || || || || || | || | || ||| || || || || Sbjct 288428 AATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAAT 288369 Query 5998 GTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGG 6057 ||||||||||| |||| ||| | || || ||||| || || || || || ||||| Sbjct 288368 ATTGTTTCCATAAAGTAAAGAATCGAAAACAGGCTCACGAATACCATCAATATCTACTGG 288309 Query 6058 GGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCAT 6117 || || || | ||| || | |||||| ||| |||||| ||||| | | || ||||| Sbjct 288308 AGGGGCTGCGATGAAGGCGATAATAAATACAGAAGTTGCAGTTAATAAGGTAGGGATCAT 288249 Query 6118 TAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || ||| | |||| || | || || ||||| | ||||||| | | ||||| ||||| Sbjct 288248 CAAAACATCGGACCATCCGATGTAAAGACGGTTTTCGGTGCTATTTATCCAGTTGCAGAA 288189 >seq4136 Length=310402 Score = 154 bits (170), Expect = 4e-33 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 5303 TCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCC 5362 ||||| || || || ||||| || || ||||| || || ||||||||||| || || Sbjct 3065 TCAACTACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCT 3124 Query 5363 ATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGG 5422 | || || | ||| || | || || ||||||| ||||| |||||| |||||| ||| Sbjct 3125 AAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGA 3184 Query 5423 CTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACA 5482 |||||||| |||||||| |||||||| | || |||||||| |||||||| || ||| Sbjct 3185 GAGTTGTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACA 3244 Query 5483 ATGTTATACGTTTCTTCCTCTTGGCCGAAT 5512 || ||||| || ||||||||||| || ||| Sbjct 3245 ATATTATAAGTCTCTTCCTCTTGACCAAAT 3274 >seq203 Length=971741 Score = 136 bits (150), Expect = 1e-27 Identities = 130/165 (79%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 778020 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 777961 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307 || |||||||| | || ||| |||||||| || | | ||| |||| ||||| Sbjct 777960 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTA---TCAAC 777904 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGT 5352 || || || ||||| || || ||||| || || ||||||||||| Sbjct 777903 TACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGT 777859 >seq4428 Length=185154 Score = 132 bits (146), Expect = 1e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 ||||||| |||| ||| | | || |||||||| ||||| ||||| | |||||| || Sbjct 19559 CCATGCAAAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAAT 19618 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 | |||||||||||| |||| |||||||||||||| | ||||||||| ||||||||||| Sbjct 19619 GAATGCATAAGGATGTTGTACTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 19678 Query 5699 ATACCAAGAGGCATACCATCA 5719 || | | ||||||||||||| Sbjct 19679 ATTTCTAAAGGCATACCATCA 19699 >seq4148 Length=313690 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 5621 ACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATA 5680 ||||| | |||||| || |||||||||||||| ||||| | ||||| ||||| | |||| Sbjct 162948 ACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTTTGCCTATAATACAATCATA 163007 Query 5681 AAGTTAAAAGTAC 5693 ||||||||||||| Sbjct 163008 AAGTTAAAAGTAC 163020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152641402907292