Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq4204 468 2e-127 seq3130 370 3e-98 seq3676 297 6e-76 seq4136 147 7e-31 seq4428 111 5e-20 seq203 105 2e-18 >seq4204 Length=279751 Score = 468 bits (518), Expect = 2e-127 Identities = 692/979 (71%), Gaps = 21/979 (2%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||||||||| || ||||| || ||||| |||||||| || | | Sbjct 215781 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 215840 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||||||||||| | || | || | | ||||| || || Sbjct 215841 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAAGTACAGAT 215900 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || ||||| || || ||||||||||| | || | ||| || | | Sbjct 215901 TGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 215960 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||||| |||||| |||||| ||| || ||||| Sbjct 215961 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 216020 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || |||||||| |||||||| || ||||| ||||| ||| Sbjct 216021 CTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATAAGTC 216080 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| || ||| | || || | || ||||||| |||| ||||| | Sbjct 216081 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTCCCTG 216140 Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | |||| || |||| || ||||||||| ||||| | || |||||| Sbjct 216141 ATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCCGAAT 216197 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || ||||| | ||| || || |||||||||||||| ||||| |||||||| || Sbjct 216198 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAAT 216257 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 |||| |||||| |||||||| || || || || | ||||||||||||||||||||| ||| Sbjct 216258 ACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCT 216317 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049 || |||| ||| || | ||||| |||||| | ||| |||| || Sbjct 216318 TGACCAATAGGATAAATCAAGAAAACAGCA---------------GTAGCTAAATATGCA 216362 Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 ||| ||||| || | ||| || || | |||| |||||||| | || |||| ||| Sbjct 216363 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAA 216422 Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169 | | || | | ||||| | ||||| || | ||| || || || || || ||| Sbjct 216423 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTGTATAAC 216482 Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229 ||||| || | | |||||||||||| |||||||| ||||| | ||||| || ||| Sbjct 216483 CACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAA 216542 Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289 | || | || || || ||||| || ||||||||||| ||||| | | || |||||| Sbjct 216543 GTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACTAGAAACAGGC 216602 Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 26349 |||||||||||||| ||||| || |||| || | | || || || | |||| | | Sbjct 216603 TCACGAATACCATCAATATCTACTAGAGGGGCTGTGATGAAGGCGATAATAAATACAGAA 216662 Query 26350 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 26409 ||| || || | | ||||||||| | || || ||||| || | || || ||||| Sbjct 216663 GTTGCAGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTT 216722 Query 26410 TTTGTACTTGTAACCCAGT 26428 | || || || | ||||| Sbjct 216723 TCGGTGCTAGTTATCCAGT 216741 >seq3130 Length=1765 Score = 370 bits (410), Expect = 3e-98 Identities = 497/686 (72%), Gaps = 8/686 (1%) Strand=Plus/Plus Query 25726 CCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTC 25785 |||||||| || ||||| ||| |||||||| ||||| || ||| | || |||| || Sbjct 656 CCATGAGCGGCCACAATATTAA--GTCTCTTCCTCTTGACCAAATCTGTAACCATCATTA 713 Query 25786 TGAGATTCAAGCCCAGTTGTTTCACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGC 25842 ||||||| |||| ||||| | || || | |||| || |||| || || Sbjct 714 GCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGT 770 Query 25843 ATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGC 25902 |||||| ||||| | ||||||||||| || || ||||| | ||| || || |||||| Sbjct 771 ATAGCACTGAATAGGGAACCACCGAATACACCAGCTACACCTAACATGTGAAATGGATGC 830 Query 25903 ATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCA 25962 |||||||| ||||| |||||||| || |||| |||||| |||||||| || || || || Sbjct 831 ATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCT 890 Query 25963 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAAT 26022 | ||||||||||||||||||||| ||||| |||| ||| || | ||||| |||||| Sbjct 891 AAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTA 950 Query 26023 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAA 26082 || ||||||||||| |||||||| || ||| ||||| || | ||| || || | || Sbjct 951 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 1010 Query 26083 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATA 26142 || |||||||| | || |||| ||| | | || | | ||||| | ||||| Sbjct 1011 CTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 1070 Query 26143 AGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 26202 || | ||| || || || || || |||||||| || | | |||||||||||| |||||| Sbjct 1071 AGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGG 1130 Query 26203 TAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTT 26262 || ||||| | ||||| || ||| | || | || || || ||||| || |||||| Sbjct 1131 TAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTT 1190 Query 26263 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 26322 ||||| ||||| | || || |||||||||||||||||||| ||||| || ||||| || Sbjct 1191 CCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCT 1250 Query 26323 GCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACC 26382 || | || || || | |||| | | ||| || || | | ||||||||| | || Sbjct 1251 GCGATGAAGGCGATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACA 1310 Query 26383 CCAAACCACCCCACATAGAGGCGGTT 26408 || ||||| || | || || ||||| Sbjct 1311 CCGAACCATCCGATGTAAAGACGGTT 1336 >seq3676 Length=461187 Score = 297 bits (328), Expect = 6e-76 Identities = 409/572 (72%), Gaps = 5/572 (1%) Strand=Plus/Minus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || ||||||||| ||||| | || || || | || ||||| | ||| | || Sbjct 288782 CCATGCATAGCACTGAATAGGGAACCGCCAAACA-----GCTACACCTAACATGCGAAAT 288728 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 |||||||||||||| ||||| ||| |||| || |||| |||||| |||||||| || || Sbjct 288727 GGATGCATAAGGATGTTGTGCTCTACCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 288668 Query 25957 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 26016 || || | ||||||||||||||||||||| ||||| |||| ||| || | ||||| ||| Sbjct 288667 ATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACA 288608 Query 26017 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGT 26076 ||| || |||||||||| |||||||| || ||| ||||| || | ||| || || Sbjct 288607 GCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGA 288548 Query 26077 CTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAAC 26136 | |||| |||||||| | || |||| ||| | | || | | ||||| | Sbjct 288547 CGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGA 288488 Query 26137 ACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAG 26196 ||||| || | ||| || || || || || |||||||| || | | |||||||||||| Sbjct 288487 ACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAA 288428 Query 26197 ATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATG 26256 |||||||| ||||| | ||||| || ||| | || | || || || ||||| || Sbjct 288427 ATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATA 288368 Query 26257 TTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGA 26316 ||||||||||| ||||| | | | |||||||||||||||||||| ||||| || ||| Sbjct 288367 TTGTTTCCATAAAGTAAAGAATCGAAAACAGGCTCACGAATACCATCAATATCTACTGGA 288308 Query 26317 GGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATT 26376 || || || | || || || | |||| | | ||| ||||| | | ||||||||| Sbjct 288307 GGGGCTGCGATGAAGGCGATAATAAATACAGAAGTTGCAGTTAATAAGGTAGGGATCATC 288248 Query 26377 AGTACCCCAAACCACCCCACATAGAGGCGGTT 26408 | || | |||| || | || || ||||| Sbjct 288247 AAAACATCGGACCATCCGATGTAAAGACGGTT 288216 >seq4136 Length=310402 Score = 147 bits (162), Expect = 7e-31 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25560 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 25619 |||||| || || || ||||| || || ||||| || || ||||||||||| | || Sbjct 3064 ATCAACTACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACC 3123 Query 25620 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACG 25679 | ||| || | ||| || | || ||||||||||||| |||||| |||||| ||| Sbjct 3124 TAAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACG 3183 Query 25680 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 25739 || ||||| |||||||| |||||||| | || |||||||| |||||||| || || Sbjct 3184 AGAGTTGTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCAC 3243 Query 25740 AATGTTATACGTCTCTTCTTCTTGGCCGAAT 25770 ||| ||||| |||||||| ||||| || ||| Sbjct 3244 AATATTATAAGTCTCTTCCTCTTGACCAAAT 3274 >seq4428 Length=185154 Score = 111 bits (122), Expect = 5e-20 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || |||| |||| ||||| | || |||||||| || || ||||| | ||| || || Sbjct 19559 CCATGCAAAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAAT 19618 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 | |||||||||||| |||| |||||||| || |||| |||||| |||||||| || || Sbjct 19619 GAATGCATAAGGATGTTGTACTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 19678 Query 25957 ATACCAAGAGGCATACCATCA 25977 || | | ||||||||||||| Sbjct 19679 ATTTCTAAAGGCATACCATCA 19699 >seq203 Length=971741 Score = 105 bits (116), Expect = 2e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||||||||| || ||||| || ||||| |||||||| || | | Sbjct 778016 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 777957 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||||||||||| | || | || | | |||||| || || Sbjct 777956 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 777897 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGT 25610 || ||||| || || ||||| || || ||||||||||| Sbjct 777896 TGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGT 777859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151985438133672