Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq4197 123 2e-23 seq359 93.3 3e-14 seq4294 87.8 1e-12 seq1692 87.8 1e-12 seq1042 84.2 2e-11 >seq4197 Length=262831 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || ||||||||||| || | || | | |||| || | ||| Sbjct 76797 TGGAGGGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTGCGGCCATCCTCAAGCTGC 76738 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| |||| |||||| || || || || ||||| || || ||||| || || Sbjct 76737 TTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCTTGGATCTTG 76678 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||||||| || || || || |||| ||||||||||| Sbjct 76677 GCCTTCACGTTGTCAATTGTGTCAGACGACTCAACCTCCAGGGTGATTGTTTTGCCGGTC 76618 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| |||||||| Sbjct 76617 AAGGTCTTCACAAAGATCTGCAT 76595 >seq359 Length=971778 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || ||||| || || || ||||| || || | || | |||| ||| Sbjct 509630 ACCAAGTGAAGAGTTGATTCCTTCTGAATGTTGTAGTCAGCCAGTGTGCGTCCATCCTCC 509571 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 || ||||| || ||||||||||||||||||||||| || ||||| ||||| || || || Sbjct 509570 AACTGCTTGCCAGCAAATATCAAACGCTGTTGATCCGGAGGAATCCCTTCCTTGTCCTG 509512 >seq4294 Length=230714 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| ||||||| || | |||| |||| ||| Sbjct 45182 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGTCCATCTTCCAGCTGC 45123 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||| || || ||||||||||| || || || || || || Sbjct 45122 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTG 45063 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | ||||| || || |||| || || || || Sbjct 45062 GCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCTGTC 45003 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 | || || || || |||||||| || Sbjct 45002 AGGGTCTTCACGAAGATCTGCATCGT 44977 >seq1692 Length=674084 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| || || || ||||| || || |||||||| || | || | |||| ||| Sbjct 587154 ACCAAATGGAGTGTTGACTCTTTCTGAATGTTGTAATCAGCTAATGTGCGCCCATCTTCC 587213 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| |||||||| |||| | || ||||| || |||||||| ||||| || ||| Sbjct 587214 AATTGCTTCCCTGCAAAAATCAGCCTTTGCTGATCTGGGGGAATGCCCTCTTTGTCCTGA 587273 Query 101381 A 101381 | Sbjct 587274 A 587274 >seq1042 Length=22717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || || || || || ||||| || || | || | |||| ||| Sbjct 10581 ACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCCAATGTGCGTCCATCCTCC 10522 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 || || || || ||||||||||||||||||||||| || ||||| ||||| || || || Sbjct 10521 AACTGTTTGCCAGCAAATATCAAACGCTGTTGATCTGGAGGAATCCCTTCCTTGTCCTG 10463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396256560354354