Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 107 1e-18
seq4493 102 6e-17
seq1848 100 2e-16
seq2624 95.1 9e-15
seq3577 91.5 1e-13
seq891 91.5 1e-13
seq4294 87.8 1e-12
seq2778 86.0 5e-12
seq359 84.2 2e-11
seq192 82.4 6e-11
>seq4197
Length=262831
Score = 107 bits (118), Expect = 1e-18
Identities = 163/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595
|| ||| || | || || | ||||| || || ||| ||| || || |||||||||||
Sbjct 76825 GTAGCCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAATC 76766
Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGT 48655
| || | || | || || | ||||||||| ||||| ||||| ||||| || ||||
Sbjct 76765 CGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGG 76706
Query 48656 GGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC 48715
||| | |||||||||||| ||||| || || | | | || |||| |||
Sbjct 76705 GGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATTGTGTCAGACGACTC 76646
Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||||||| || || ||||| || ||||| || || ||||| |||||||||
Sbjct 76645 AACCTCCAGGGTGATTGTTTTGCCGGTCAAGGTCTTCACAAAGATCTGCATC 76594
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| |||| | |||| || || ||| ||| || || || ||||| ||||
Sbjct 76593 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 76534
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | || | || || | |||||| || ||||| ||||| ||||| || |||| |||
Sbjct 76533 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGG 76474
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| |||||||||||| ||||| || ||| | | | ||||| | ||| |||
Sbjct 76473 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATTGTGTCTGATGACTCAACC 76414
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | || || || || || |||| ||| || ||||| ||||||||
Sbjct 76413 TCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 76367
>seq4493
Length=164055
Score = 102 bits (112), Expect = 6e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| || || | ||| | || || ||| ||| || || || ||||| ||||
Sbjct 95747 GCCTCCCCTGAGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 95688
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| | | |||| |||| |||||| || ||||| || || ||||| ||||| | |||
Sbjct 95687 AAGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCTGGGGG 95628
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
|| |||||||||||| ||||| || || | | | || || | ||||||
Sbjct 95627 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGGACTCCAC 95568
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||| | || || || || || ||||| || || |||||||||||||||
Sbjct 95567 CTCAAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCATC 95519
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| || || | || | ||| || || ||| || || || ||||| ||||
Sbjct 95975 GCCTCCCCTGAGGCGGAGGACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGC 95916
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| | || | || |||| |||||| |||||||| || || ||||| || |||| |||
Sbjct 95915 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGG 95856
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
|| ||||||||||| ||||| || || | | | || || | ||||||
Sbjct 95855 AATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAAGACTCCAC 95796
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| | || || || || || |||| ||| || || || ||||||||
Sbjct 95795 CTCGAGGGTGATAGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 95748
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| || || | || | || || || ||| || || || ||||| ||||
Sbjct 96203 GCCACCCCTGAGGCGGAGGACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGC 96144
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
||| | | | || |||| |||||| |||||||| || || ||||| || || | |||
Sbjct 96143 AAGAGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGGGG 96084
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| |||||||||||| ||||| || ||| | | | || || | ||||||
Sbjct 96083 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCCAC 96024
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| | || || || || || ||||| || || ||||| ||||||||
Sbjct 96023 CTCAAGGGTGATAGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 95976
>seq1848
Length=11040
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||| || || ||| || || || || ||||| || | || | ||
Sbjct 6307 AGGCGGAGCACCAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGG 6248
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||| ||||| || || || ||||| || |||| ||||| |||||||
Sbjct 6247 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCC 6188
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | | || || | ||||||||| | ||
Sbjct 6187 TTGTCCTGGATCTTGGCCTTGACATTATCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 6128
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || |||||||| || ||||||||||||||
Sbjct 6127 ATAGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 6090
>seq2624
Length=565299
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| |||| || ||||| || || ||| ||| || || || ||||| ||||
Sbjct 25311 CCACCCCTGAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 25370
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | || |||| || | |||||| || || || || || ||||| || |||| |||
Sbjct 25371 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 25430
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| |||||||||||| ||||| || ||| | | | ||||| | ||| |||
Sbjct 25431 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCTGAGGACTCAACC 25490
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | || || || || || |||| || || ||||| ||||||||
Sbjct 25491 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACAAAGATCTGCAT 25537
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| |||| | ||| | ||| || || ||| || ||||| ||||||||||
Sbjct 25539 CCTCCCCTGAGCCTGAGCACAAGATGGAGTGTAGACTCCTTCTGAATGTTGTAATCAGCC 25598
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | || | || |||| |||||| || ||||| || || ||||| || |||| ||
Sbjct 25599 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGG 25658
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||||||||||| ||||| || || | | | ||||| | || |||
Sbjct 25659 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCGATCGTGTCTGAGGATTCGACC 25718
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | |||||| || || || ||||| || || ||||| ||||||||
Sbjct 25719 TCAAGCGTAATTGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 25765
>seq3577
Length=483236
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
||||||| | || || | ||||| || || ||| ||| || || || ||||| || |
Sbjct 183953 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 183894
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
|| | || | || || | |||||| ||||| || || || ||||| || |||| |
Sbjct 183893 CGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 183834
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
| | |||||||||||| ||||| || || | | | ||||| | |||||
Sbjct 183833 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCTGAGGACTCCA 183774
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|||||| ||| || || || ||||||| || || || || ||||||||| ||
Sbjct 183773 CCTCCAACGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 183721
>seq891
Length=1582050
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
||||||| | || || | ||||| || |||||| ||| || || || ||||| || |
Sbjct 1149465 CGCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGG 1149524
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
|| | || | || || | |||||| ||||| || || || ||||| || |||| |
Sbjct 1149525 CGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 1149584
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
| | |||||||||||| ||||| || || | | | || || | |||||
Sbjct 1149585 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGGACTCCA 1149644
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|||||| ||| || || || ||||||| || || || || ||||||||| ||
Sbjct 1149645 CCTCCAACGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 1149697
>seq4294
Length=230714
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
||||||| | || || | |||| || || || ||| || || || ||||| || |
Sbjct 45208 CGCCGCCGCGCAGGCGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 45149
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
|| | || | || |||| |||||| ||||| || || || ||||| || |||| |
Sbjct 45148 CGAGCGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCG 45089
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
||| |||||||||||| ||||| || || | | | || || | |||||
Sbjct 45088 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 45029
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|||||| ||| || || || || |||| || || || || ||||||||||||
Sbjct 45028 CCTCCAGCGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCATCGTG 44976
>seq2778
Length=1391004
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| || || | ||||| || || || ||| || || || ||||| ||||
Sbjct 174002 CCACCCCTGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 174061
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | | | | || || | |||||| || || || || || ||||| || || ||||
Sbjct 174062 AGGGTCCTACCATCCTCTAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTAGGGGA 174121
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| |||||||||||| ||||| || ||| | | | || || ||| |||
Sbjct 174122 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCAGAGCTCTCAACC 174181
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||| ||||| || || | ||| || ||||||||||||||
Sbjct 174182 TCCAGGGTAATAGTTTTGCCAGTGAGAGTCTTGACAAAAATCTGCAT 174228
>seq359
Length=971778
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| |||| | ||||| || || || || || ||||| ||||| ||||
Sbjct 509648 CCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGATTCCTTCTGAATGTTGTAGTCAGCC 509589
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | || | || ||||||||||| || |||||||||| ||||||||||||| |||
Sbjct 509588 AGTGTGCGTCCATCCTCCAACTGCTTGCCAGCAAATATCAAACGCTGTTGATCCGGAGGA 509529
Query 48660 ACGCCCTCCTTGTC 48673
| || ||||||||
Sbjct 509528 ATCCCTTCCTTGTC 509515
>seq192
Length=981986
Score = 82.4 bits (90), Expect = 6e-11
Identities = 158/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || | || || | ||||| || || || ||| || || || || || || |
Sbjct 849025 CGCCACCGCGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGG 848966
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
|| |||| | || |||| |||||| ||||| || || || ||||| || |||| |
Sbjct 848965 CGAGCGTTCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCG 848906
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
| | |||||||||||| ||||| || || | | | || || | |||||
Sbjct 848905 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 848846
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|||||| ||| || || || ||||||| || || || || ||||||||| ||
Sbjct 848845 CCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 848793
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380916605814606
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