Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4197 107 1e-18 seq4493 102 6e-17 seq1848 100 2e-16 seq2624 95.1 9e-15 seq3577 91.5 1e-13 seq891 91.5 1e-13 seq4294 87.8 1e-12 seq2778 86.0 5e-12 seq359 84.2 2e-11 seq192 82.4 6e-11 >seq4197 Length=262831 Score = 107 bits (118), Expect = 1e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 || ||| || | || || | ||||| || || ||| ||| || || ||||||||||| Sbjct 76825 GTAGCCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAATC 76766 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGT 48655 | || | || | || || | ||||||||| ||||| ||||| ||||| || |||| Sbjct 76765 CGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGG 76706 Query 48656 GGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC 48715 ||| | |||||||||||| ||||| || || | | | || |||| ||| Sbjct 76705 GGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATTGTGTCAGACGACTC 76646 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||||| || || ||||| || ||||| || || ||||| ||||||||| Sbjct 76645 AACCTCCAGGGTGATTGTTTTGCCGGTCAAGGTCTTCACAAAGATCTGCATC 76594 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| | |||| || || ||| ||| || || || ||||| |||| Sbjct 76593 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 76534 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | |||||| || ||||| ||||| ||||| || |||| ||| Sbjct 76533 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGG 76474 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | ||||| | ||| ||| Sbjct 76473 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATTGTGTCTGATGACTCAACC 76414 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || |||| ||| || ||||| |||||||| Sbjct 76413 TCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 76367 >seq4493 Length=164055 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | ||| | || || ||| ||| || || || ||||| |||| Sbjct 95747 GCCTCCCCTGAGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 95688 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | |||| |||| |||||| || ||||| || || ||||| ||||| | ||| Sbjct 95687 AAGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCTGGGGG 95628 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| ||||| || || | | | || || | |||||| Sbjct 95627 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGGACTCCAC 95568 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || || || || || ||||| || || ||||||||||||||| Sbjct 95567 CTCAAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCATC 95519 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | || | ||| || || ||| || || || ||||| |||| Sbjct 95975 GCCTCCCCTGAGGCGGAGGACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGC 95916 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| |||||||| || || ||||| || |||| ||| Sbjct 95915 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGG 95856 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| ||||| || || | | | || || | |||||| Sbjct 95855 AATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAAGACTCCAC 95796 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || || || |||| ||| || || || |||||||| Sbjct 95795 CTCGAGGGTGATAGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 95748 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | || | || || || ||| || || || ||||| |||| Sbjct 96203 GCCACCCCTGAGGCGGAGGACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGC 96144 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | | | || |||| |||||| |||||||| || || ||||| || || | ||| Sbjct 96143 AAGAGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGGGG 96084 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || ||| | | | || || | |||||| Sbjct 96083 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCCAC 96024 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || || || ||||| || || ||||| |||||||| Sbjct 96023 CTCAAGGGTGATAGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 95976 >seq1848 Length=11040 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| || || || || ||||| || | || | || Sbjct 6307 AGGCGGAGCACCAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGG 6248 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| || |||| ||||| ||||||| Sbjct 6247 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCC 6188 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | | || || | ||||||||| | || Sbjct 6187 TTGTCCTGGATCTTGGCCTTGACATTATCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 6128 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||| || |||||||||||||| Sbjct 6127 ATAGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 6090 >seq2624 Length=565299 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| || ||||| || || ||| ||| || || || ||||| |||| Sbjct 25311 CCACCCCTGAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 25370 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| || || || || || ||||| || |||| ||| Sbjct 25371 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGG 25430 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | ||||| | ||| ||| Sbjct 25431 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCTGAGGACTCAACC 25490 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || |||| || || ||||| |||||||| Sbjct 25491 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACAAAGATCTGCAT 25537 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| | ||| | ||| || || ||| || ||||| |||||||||| Sbjct 25539 CCTCCCCTGAGCCTGAGCACAAGATGGAGTGTAGACTCCTTCTGAATGTTGTAATCAGCC 25598 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| |||||| || ||||| || || ||||| || |||| || Sbjct 25599 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGG 25658 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || || | | | ||||| | || ||| Sbjct 25659 ATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCGATCGTGTCTGAGGATTCGACC 25718 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | |||||| || || || ||||| || || ||||| |||||||| Sbjct 25719 TCAAGCGTAATTGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 25765 >seq3577 Length=483236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || || | ||||| || || ||| ||| || || || ||||| || | Sbjct 183953 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 183894 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || | || || | |||||| ||||| || || || ||||| || |||| | Sbjct 183893 CGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 183834 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || || | | | ||||| | ||||| Sbjct 183833 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCTGAGGACTCCA 183774 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| || || || ||||||| || || || || ||||||||| || Sbjct 183773 CCTCCAACGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 183721 >seq891 Length=1582050 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || || | ||||| || |||||| ||| || || || ||||| || | Sbjct 1149465 CGCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGG 1149524 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || | || || | |||||| ||||| || || || ||||| || |||| | Sbjct 1149525 CGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 1149584 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || || | | | || || | ||||| Sbjct 1149585 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGGACTCCA 1149644 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| || || || ||||||| || || || || ||||||||| || Sbjct 1149645 CCTCCAACGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 1149697 >seq4294 Length=230714 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || || | |||| || || || ||| || || || ||||| || | Sbjct 45208 CGCCGCCGCGCAGGCGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 45149 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || | || |||| |||||| ||||| || || || ||||| || |||| | Sbjct 45148 CGAGCGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCG 45089 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| |||||||||||| ||||| || || | | | || || | ||||| Sbjct 45088 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 45029 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| || || || || |||| || || || || |||||||||||| Sbjct 45028 CCTCCAGCGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAGATCTGCATCGTG 44976 >seq2778 Length=1391004 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||||| || || || ||| || || || ||||| |||| Sbjct 174002 CCACCCCTGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 174061 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | | || || | |||||| || || || || || ||||| || || |||| Sbjct 174062 AGGGTCCTACCATCCTCTAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTAGGGGA 174121 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || || ||| ||| Sbjct 174122 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCAGAGCTCTCAACC 174181 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| ||||| || || | ||| || |||||||||||||| Sbjct 174182 TCCAGGGTAATAGTTTTGCCAGTGAGAGTCTTGACAAAAATCTGCAT 174228 >seq359 Length=971778 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| | ||||| || || || || || ||||| ||||| |||| Sbjct 509648 CCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGATTCCTTCTGAATGTTGTAGTCAGCC 509589 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || ||||||||||| || |||||||||| ||||||||||||| ||| Sbjct 509588 AGTGTGCGTCCATCCTCCAACTGCTTGCCAGCAAATATCAAACGCTGTTGATCCGGAGGA 509529 Query 48660 ACGCCCTCCTTGTC 48673 | || |||||||| Sbjct 509528 ATCCCTTCCTTGTC 509515 >seq192 Length=981986 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| || || || ||| || || || || || || | Sbjct 849025 CGCCACCGCGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGG 848966 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || |||| | || |||| |||||| ||||| || || || ||||| || |||| | Sbjct 848965 CGAGCGTTCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCG 848906 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || || | | | || || | ||||| Sbjct 848905 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 848846 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| || || || ||||||| || || || || ||||||||| || Sbjct 848845 CCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 848793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380916605814606