Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq4204 571 6e-158 seq3130 396 3e-105 seq3676 295 7e-75 seq4136 187 3e-42 seq203 154 2e-32 seq4428 127 2e-24 seq1536 86.0 7e-12 >seq4204 Length=279751 Score = 571 bits (632), Expect = 6e-158 Identities = 700/953 (73%), Gaps = 27/953 (3%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||| ||||||||||| |||||||||||| ||| | | ||| | || || || | Sbjct 216708 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTA 216649 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| |||| |||| ||| ||||| |||||||| | || |||||| | ||| Sbjct 216648 TCGCCTTCATCACAGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTT 216589 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | | || ||||| ||||| || ||||||||||| | |||||| ||| || || | Sbjct 216588 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCG 216529 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 | | ||||| || || || |||||||| ||| || ||||||||||||| || ||||| | Sbjct 216528 GATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCG 216469 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTC 162835 | |||| | || | || | |||||| | | || | ||| | | | |||| Sbjct 216468 GCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTC 216412 Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895 || |||||||||| || ||| | ||||||||||||||||| ||||||||| | | Sbjct 216411 GTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAG 216352 Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955 | || |||| ||| |||||| | |||||| | |||||||| ||||| Sbjct 216351 C-----TA-CTGC---------TGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCT 216307 Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015 |||| | |||||| | || || ||||||||||| |||| ||| | || ||||| |||| Sbjct 216306 CTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAG 216247 Query 163016 AGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTT 163075 ||||||||||||| ||||| || || || ||| | || || || ||||||||||| |||| Sbjct 216246 AGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTT 216187 Query 163076 CACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTG 163135 | || || ||||||||||| ||||| | || || ||| | | ||||| ||||| |||| Sbjct 216186 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 216127 Query 163136 AGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTG 163195 | | || || || | ||||| | || || ||||| ||||||||||| || |||| Sbjct 216126 AAAATGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 216067 Query 163196 TTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCAC 163255 | || |||||||| |||||||| || || |||||||| ||||| ||| |||||||| | Sbjct 216066 TGGCCGCTCATGGTTACTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTC 216007 Query 163256 GTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGG 163315 |||| | ||||||||| | ||||| | ||||| || | || ||||||||||| | | Sbjct 216006 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAG 215947 Query 163316 GTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA-- 163373 || | |||||||| |||||||| ||||| ||||| ||||||||||| || |||| Sbjct 215946 GTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATA 215887 Query 163374 -CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTA 163432 | |||| | || ||| ||||||||| |||||| | ||| | || ||||||| Sbjct 215886 GCCAAGGTCG---CGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTA 215830 Query 163433 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 ||||||| |||||||| |||||||||||||||||||| || ||||| |||||| Sbjct 215829 TGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 396 bits (438), Expect = 3e-105 Identities = 493/673 (73%), Gaps = 8/673 (1%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||| ||||||||||| |||||||||||| ||| | | ||| | || || || | Sbjct 1323 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTA 1264 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| ||||| |||||||| ||||| |||||||| | || |||||| | |||| Sbjct 1263 TCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTT 1204 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | | || ||||| ||||| || ||||||||||| | |||||| ||| || || | Sbjct 1203 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCG 1144 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 | | ||||| || || || |||||||| ||| || ||||||||||||| || ||||| | Sbjct 1143 GATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCG 1084 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTC 162835 | |||| | || | || | |||||| | | || | ||| | | | |||| Sbjct 1083 GCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTC 1027 Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895 || |||||||||| || ||| | ||||||||||||||||| ||||||||| || | Sbjct 1026 GTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAG 967 Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955 | || || | || || ||||| |||||| | |||||| | |||||||| ||||| Sbjct 966 CTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCT 907 Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015 |||| | |||||| | || || ||||||||||| |||| ||| | || ||||| |||| Sbjct 906 CTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAG 847 Query 163016 AGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTT 163075 ||||||||||||| ||||| || || || ||| | || || || |||||||||||||||| Sbjct 846 AGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGTGGTT 787 Query 163076 CACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTG 163135 | || || |||||||| || ||||| | || || ||| | | ||||| ||||| |||| Sbjct 786 CCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 727 Query 163136 AGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTG 163195 | | || || || | ||||| | || || ||||| |||||||||| || |||| Sbjct 726 AAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGGAAGAGACTT--AATATTG 669 Query 163196 TTGCTGCTCATGG 163208 | || |||||||| Sbjct 668 TGGCCGCTCATGG 656 >seq3676 Length=461187 Score = 295 bits (326), Expect = 7e-75 Identities = 405/565 (72%), Gaps = 11/565 (2%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||| |||| || ||| |||||||||||| ||| | | ||| | || || || | Sbjct 288229 TCGGATGGTCCGATGTTTTGATGATCCCTACCTTATTAACTGCAACTTCTGTATTTATTA 288288 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| ||||| |||||||| ||||| |||||||| | || |||||| | || Sbjct 288289 TCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATT 288348 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | | || ||||| ||||| || ||||||||||| | |||||| ||| || || | Sbjct 288349 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCG 288408 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 | | ||||| || || || |||||||| ||| || ||||||||||||| || ||||| | Sbjct 288409 GATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCG 288468 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTC 162835 | |||| | || | || | |||||| | | || | ||| | | | |||| Sbjct 288469 GCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTC 288525 Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895 || |||||||||| || ||| | ||||||||||||||||| ||||||||| || | Sbjct 288526 GTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAG 288585 Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955 | || || | | || ||||| |||||| | |||||| | |||||||| ||||| Sbjct 288586 CTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCT 288645 Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015 |||| | |||||| | || || ||||||||||| |||| ||| | || ||||| | || Sbjct 288646 CTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAG 288705 Query 163016 AGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTT 163075 ||||||||||||| ||||| || || | ||| | || || || | || || |||| Sbjct 288706 AGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGC-----TGTTTGGCGGTT 288760 Query 163076 CACTCTTTAGTGCTATGCACGGTTC 163100 | || || ||||||||||| ||||| Sbjct 288761 CCCTATTCAGTGCTATGCATGGTTC 288785 >seq4136 Length=310402 Score = 187 bits (206), Expect = 3e-42 Identities = 199/260 (77%), Gaps = 7/260 (3%) Strand=Plus/Minus Query 163161 TAAG-TTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTC 163219 |||| || || ||||| ||||||||||| || ||||| || |||||||| |||||||| | Sbjct 3278 TAAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCC 3219 Query 163220 GCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTG 163279 | || |||||||| ||||| ||| |||||||| ||||| | ||||||||| | |||| Sbjct 3218 GATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTG 3159 Query 163280 CATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACC 163339 | | ||||| || | || ||||||||||| | ||| | |||||||| ||||||| Sbjct 3158 CTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 3099 Query 163340 TTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTA 163396 | ||||| ||||| ||||||||||| || ||||| | |||| | || ||| || Sbjct 3098 TAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCG---CGTTATTAATA 3042 Query 163397 CTTGGGCAGATATCCTTAAC 163416 ||||||| |||||| | ||| Sbjct 3041 CTTGGGCTGATATCATCAAC 3022 >seq203 Length=971741 Score = 154 bits (170), Expect = 2e-32 Identities = 151/192 (79%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 163297 ATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTC 163356 || ||||||||||| | ||| | |||||||| |||||||| ||||| ||||| ||| Sbjct 777832 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 777891 Query 163357 AACCAATCCGTCGTTGAC-GC--AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTT 163413 |||||||| || ||||| || |||| | || ||| ||||||||| |||||| | Sbjct 777892 AACCAATCTGTAGTTGATAGCCAAGGTCGC---GTTATTAATACTTGGGCTGATATCATC 777948 Query 163414 AACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTT 163473 ||| | || |||||||||||||| |||||||| |||||||||||||||||||| || Sbjct 777949 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 778008 Query 163474 GACCTTGCTGCT 163485 ||||| |||||| Sbjct 778009 GACCTAGCTGCT 778020 >seq4428 Length=185154 Score = 127 bits (140), Expect = 2e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023 |||||| | | || ||||||||||| |||| ||| | || ||||| |||||| ||||| Sbjct 19692 ATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGTACAAC 19633 Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTT 163083 ||||| ||||| | || || ||| | || || || ||||||||||| ||||| || || Sbjct 19632 ATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTC 19573 Query 163084 AGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGA 163136 |||||| |||| ||||| | || || ||| | | ||||| ||||| ||||| Sbjct 19572 AGTGCTTTGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGA 19520 >seq1536 Length=687949 Score = 86.0 bits (94), Expect = 7e-12 Identities = 188/270 (70%), Gaps = 24/270 (9%) Strand=Plus/Minus Query 163013 CAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGA-GTCGCAGGTGTATTCGGT 163071 ||| ||||| ||| | ||||| || || | || ||| || || || |||||||| | | Sbjct 571264 CAGCGCACAGCATTTTTATGCATCCATTTTACAT-ATTAGATGTAGCGGGTGTATTGGAT 571206 Query 163072 GGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACT 163131 |||| || | |||||||| ||| | || || ||| | | |||||| |||| Sbjct 571205 TGTTCCCTGCTCAGTGCTAT-------TCTTTGGTAACCTCTAGTTTGATCAGA-AAACC 571154 Query 163132 ACTGAGCAAGAGTC-ACAGA--ACTA-CG---GTTATAAGTTCGGACAAGAAGAAGAGAC 163184 ||| || | || || || | |||| || |||| || || | | ||||||||||||| Sbjct 571153 ACT-AGAATGAATCTACTAACGACTAACGAGAGTTACAAATTTG-ATAAGAAGAAGAGAC 571096 Query 163185 TTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTAT----GCAT 163240 ||| || ||||| | ||||||| |||||||| || || |||||| | ||| | | Sbjct 571095 TTATAATATTGTGGTCACTCATGGTTACTTTGGCCGATTAATCTTCTAATATACGAGTAG 571036 Query 163241 CTTTCAACAACTCACGTTCACTTCACTTCT 163270 |||| |||||||| || | | ||||||| Sbjct 571035 CTTT-AACAACTCTTGTCCTTTACACTTCT 571007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553053536881680