Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq603 228 2e-54 seq4 223 6e-53 >seq603 Length=994148 Score = 228 bits (252), Expect = 2e-54 Identities = 566/848 (67%), Gaps = 31/848 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| ||||| || ||||| |||| || |||||| ||| Sbjct 841486 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGGGAGATGAGCTC 841545 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||||||||||| ||| |||| | | || ||| || | | || Sbjct 841546 CATCCAGTCGAAGGGGTTGGTGACGTTGTACATCTTCTTG-CAG-CCGAGCGCCATTAGG 841603 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | ||||||| | ||||||||| | ||| Sbjct 841604 AGGCGGTCAGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 841663 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | ||| | || || | | |||| || | |||||||| | || || Sbjct 841664 GCGACGGGGAGAGCGTCGCAGACGAAGTTCCTCTCGATGTCGACGGCTTCGGCGACGAT- 841722 Query 48077 TGCTTA-ACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 ||| ||||||| ||| | ||| ||| ||| | | | ||||| | |||||| Sbjct 841723 TGCACGGACGCGGGCCTCGTCAAGCTTGCCGCGGAGGAGGTCG---TAGAGGAGGCAGGC 841779 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || || Sbjct 841780 GAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 841839 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| || | || ||||||||||| || || ||| || || ||||| |||||||| Sbjct 841840 CATGAGGCCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCCGAGAAAAAGATGCC 841899 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCC 48314 ||| || ||||| ||| || | ||| | |||||| || | | ||||| Sbjct 841900 CTCGACGCAGGCGAAGGCGACTAGGCGCTCGGC----GAAGCGCTCACCGCCGTCGATCC 841955 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGG 48370 || | |||||||| ||||| | ||| ||| | || |||||||| ||| Sbjct 841956 AGCGCATGGCCCAGTCGGCCTT----GCGGCGCACGGCGGGAACGGTGTCTATGGCGCGG 842011 Query 48371 AA---GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTAC 48427 || | | | ||| ||| | |||| | || || ||||||| | |||| Sbjct 842012 AAAAGGCGGTCCTT---CTCGACGTCGTCGCGGATGTACGTCTCGAGCAGCAGCGAGTAC 842068 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 ||||| || || | ||||| || ||||||||||| ||||||||||| | ||||| Sbjct 842069 ATCTCCGAATGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGGCGCGCGCCTCGGCG 842128 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 |||||||| || | ||| ||| | || ||||| || || ||||| || || Sbjct 842129 ACCTGCACGTCGGACATGAACCTCGACGCGAGGTTCTCGAGCACGATACCATCAGAGGCG 842188 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTC 48604 || |||||||| || || || | |||||||||||||| | ||| || | | | Sbjct 842189 GCGAAGAAGGCGAGCACGTGGGAGACGAAATGGCGCTCGTCGGGGGACAGCGTGGTGTCC 842248 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 ||| | |||| | |||||||| || ||| |||||||| ||||| | || Sbjct 842249 CAGTGGCGCGCGTCGGAGGAGAGGTCCACCTCCTCCGTCGTCCAGAACGACGCCACCGCC 842308 Query 48665 TTTTTGTA 48672 || ||||| Sbjct 842309 TTCTTGTA 842316 >seq4 Length=1057841 Score = 223 bits (246), Expect = 6e-53 Identities = 576/867 (66%), Gaps = 27/867 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 125084 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTC 125143 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || |||||| |||| ||| |||| | | || ||| || | | ||| Sbjct 125144 CATCCAGTCGAAGGGATTGGCGACGTTGTACATCTTCTTG-CAG-CCGAGCGCCATGAGC 125201 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| ||||||| || | ||| ||| ||||||||| | ||| Sbjct 125202 AGGCGGTCGGCGACGAACTCGATATACTGGCTCATCAGGACTCCGTTCATGCCGACGAGA 125261 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | || |||||| | || || | ||||| || | || ||| Sbjct 125262 GCGACGGGGAGCGCGTCGCAGACGAACTCCCTTTCGATGTCGACGGCGTCAACGACGATC 125321 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||||| ||| | | ||| ||| ||| | | | ||||| | ||| || Sbjct 125322 TCGCGGACGCGGGTCTCATCGAGCTTGCCGCGGAGGAGGTCG---TAGAGGAGGCATGCG 125378 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||||| ||| Sbjct 125379 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTAAGACCCGGC 125438 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || || ||||| || || || ||| ||||| ||||||||||||||| Sbjct 125439 ATGAGGCCGCGCTTCTTAAGCCAAAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 125498 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCCA 48315 || || ||||| || ||| | ||| | |||||| || | | |||||| Sbjct 125499 TCGACGCAGGCGAAAGCAACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCA 125554 Query 48316 GGAAAGCGCCCAGTCTGCCTT-CTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | | ||||| || ||||| | | ||| || | || || ||||| ||||||| Sbjct 125555 GCGCATGGCCCACTCGGCCTTGCGGCGCACAGCA-GGGACGGTGTCGATGGCGCGGAAGA 125613 Query 48375 ---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 | | ||| ||| | |||| | || || ||||||| | |||||||| Sbjct 125614 GACGGTCCTT---CTCGACGTCGTCGCGGATGTACGTCTCGAGCAGCAGCGAGTACATCT 125670 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | |||||| || ||||||||||||||||||||||| | ||||| |||| Sbjct 125671 CCGAGTGGATATTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCGGCGACCT 125730 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 |||| || | ||| || | || ||||| || || ||||| || || || | Sbjct 125731 GCACGTCGGACATGAACCTGGACGCGAGGTTCTCGAGCACGATGCCATCAGAGGCGGCGA 125790 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCA-----TTCCA 48606 ||||||| || || || | ||| || ||||||| ||| || |||| | ||| Sbjct 125791 AGAAGGCGAGCACGTGGGAGATGAAGTGCCGCTCGT--CGGGGGACAGCACGGTGTCCCA 125848 Query 48607 GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTT 48666 | | |||| | |||||||| || ||| | |||||||| ||||| | | || Sbjct 125849 GTGGCGCGCGTCGGAGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGACGCCACCGACTT 125908 Query 48667 TTTGTACATGCCCCATATGTCCGGATA 48693 ||||| | |||| || | ||| || Sbjct 125909 CTTGTAGAACTCCCAGATCTGCGGGTA 125935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931480145108480