Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq603 190 4e-43 seq4 170 4e-37 >seq603 Length=994148 Score = 190 bits (210), Expect = 4e-43 Identities = 331/472 (70%), Gaps = 11/472 (2%) Strand=Plus/Minus Query 25573 GACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTG 25632 ||||||| ||||| || ||||| | || ||||| || |||||||||||||| ||| Sbjct 842229 GACGAGCGCCATTTCGTCTCCCACGTGCTCGCCTTCTTCGCCGCCTCTGATGGTATCGTG 842170 Query 25633 AACGAGAATCTGTGCGA-GAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691 |||||| || ||| ||| |||| || |||||| || ||||| || Sbjct 842169 CTCGAGAACCTC-GCGTCGAGGTTCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTT 842111 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 ||||||||||||||| |||||||| || | || || ||| |||| | ||| || Sbjct 842110 CTACGGTTTCCAGATCGCCATCGAGAACATCCATTCGGAGATGTACTCGCTGCTGCTCGA 842051 Query 25752 GACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACC 25811 ||||||||| |||| || ||||| || || || || | ||||| || | | || Sbjct 842050 GACGTACATCCGCGACGACGTCGAGAAGGACCGCCTTTTCCGCGCCATAGACACCGTTCC 841991 Query 25812 CAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGT 25870 | | | | ||||| ||||||||| |||||| || || ||||||| || Sbjct 841990 CGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGTGAGCGCTTCGC 841931 Query 25871 TTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT- 25928 |||||| || || ||||| || ||| || ||||||||||||||| || || || Sbjct 841930 ----CGAGCGCCTAGTCGCCTTCGCCTGC-GTCGAGGGCATCTTTTTCTCGGGATCCTTC 841876 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 |||| ||||||||||||||||| || || |||||| || || ||| |||||||| Sbjct 841875 TGCG-CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 841817 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||||||| | | |||||||| || ||| | || || |||||||| |||||| Sbjct 841816 GCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTAC 841765 >seq4 Length=1057841 Score = 170 bits (188), Expect = 4e-37 Identities = 329/473 (70%), Gaps = 13/473 (3%) Strand=Plus/Minus Query 25573 GACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTG 25632 ||||||| ||| || || ||||| | || ||||| || ||||||||||| || ||| Sbjct 125827 GACGAGCGGCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCTGATGGCATCGTG 125768 Query 25633 AACGAGAATCTGTGCGAG-AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691 |||||| || ||| || |||| || |||||| || ||||| || Sbjct 125767 CTCGAGAACCTC-GCGTCCAGGTTCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTT 125709 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 |||||| |||||||| |||||||| ||| | ||||| ||| |||| | ||| || Sbjct 125708 CTACGGGTTCCAGATCGCCATCGAGAATATCCACTCGGAGATGTACTCGCTGCTGCTCGA 125649 Query 25752 GACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACC 25811 ||||||||| |||| || ||||| || || || || | |||||||| ||| || Sbjct 125648 GACGTACATCCGCGACGACGTCGAGAAGGACCGTCTCTTCCGCGCCATCGA-CACCGTCC 125590 Query 25812 CAGCATCAAGAGG-AAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACG 25869 | || | | ||||| |||||||||| |||||| || || ||||||| || Sbjct 125589 CTGCTGTGCGCCGCAAGGCCGAGTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTCG 125530 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 |||||| || || || || || ||| || ||||||||||| ||| || || || Sbjct 125529 C----CGAGCGCCTCGTTGCTTTCGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTT 125475 Query 25929 -TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987 |||| ||||||| ||||| ||| || || |||||| || || ||| ||||||| Sbjct 125474 CTGCG-CCATCTTTTGGCTTAAGAAGCGCGGCCTCATGCCGGGTCTTACCTTCTCCAACG 125416 Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||||| | | |||||||| || ||| | || || || ||||| |||||| Sbjct 125415 AGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCATGCCTCCTCTAC 125363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928792297047680