Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2778 109 4e-18 seq4346 100 2e-15 seq492 100 2e-15 seq4137 98.7 6e-15 seq4493 95.1 8e-14 seq3785 87.8 1e-11 >seq2778 Length=1391004 Score = 109 bits (120), Expect = 4e-18 Identities = 132/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || ||||| || || ||| ||| ||||||||||| |||||||| || ||||| || Sbjct 175101 TTGTAGTCAGCAAGGGTCCTGCCATCCTCAAGTTGCTTGCCAGCAAAGATGAGACGCTGC 175160 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || |||||||| || |||||||| || |||||| |||||| ||||| |||||| Sbjct 175161 TGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTATCA 175220 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||||| ||||| || || || | ||||| ||||| ||||| Sbjct 175221 GAAGACTCCA-CCTCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATTTG 175276 Score = 95.1 bits (104), Expect = 8e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || ||||| ||||| || || || | || || || || || || ||| Sbjct 174239 AGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTG 174298 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || |||||||||||||| || || || || || || || ||||| || ||| Sbjct 174299 CCATCCTCCAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCC 174358 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGT 480733 ||||| |||||||| || || ||||| || || | || | || ||||| || Sbjct 174359 TTGTCCTGAATCTTGGCCTTCACGTTGTCAATCGTGTCTGATGACTCAA-CCTCAAGTGT 174417 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||||||||||||||| || || Sbjct 174418 GATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTG 174453 Score = 93.3 bits (102), Expect = 3e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || ||||| || || ||||| || ||| || | ||| || ||||| || || ||| Sbjct 174467 AGGCGGAGGACGAGGTGAAGGGTGGATTCCTTTTGGATATTGTAGTCAGCAAGGGTCCTG 174526 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| ||||||||||| |||||||| || ||||| || || || |||||||| || ||| Sbjct 174527 CCATCCTCAAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGAATGCCCTCC 174586 Query 480675 TTGTCTTGAATCTT 480688 ||||| || ||||| Sbjct 174587 TTGTCCTGGATCTT 174600 Score = 91.5 bits (100), Expect = 1e-12 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || ||||| || || || ||| || || ||||| ||||| || || ||||| || Sbjct 174050 TTGTAGTCAGCAAGGGTCCTACCATCCTCTAGCTGCTTGCCAGCGAAGATGAGACGCTGC 174109 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || | ||||| || |||||||| || ||||| || ||| || || || ||| Sbjct 174110 TGGTCTAGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCA 174169 Query 480714 GTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || | || ||||||||||||| || ||||||||||| || ||||| || Sbjct 174170 GAGCTCTCAACCTCCA-GGGTAATAGTTTTGCCAGTGAGAGTCTTGACAAAAATCTG 174225 >seq4346 Length=1110530 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||||||||||||||| || ||||| || || | |||||| |||||||| Sbjct 474291 GCAGTTGTTACTGTTCCAGCATACTTCAATGACTCACAGAGGACAGCAACAAAAGATGCT 474350 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 ||| | || ||||| | | ||| | || ||||| ||||| ||||| || || | ||| Sbjct 474351 GGACGTATAGCAGGATTGGAAGTTCTCCGCATTATAAATGAGCCAACTGCTGCATCCCTT 474410 Query 474857 GCTTATGGTCTTGATAAGAA 474876 ||||||||| |||| | ||| Sbjct 474411 GCTTATGGTTTTGAGAGGAA 474430 >seq492 Length=908872 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 |||||| |||||||||| ||||| || ||||| || || | |||||| |||||||| Sbjct 639465 GCAGTAGTTACTGTTCCGGCATACTTCAATGACTCACAGAGAACAGCAACAAAAGATGCT 639524 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | || ||||| | | ||| | || ||||| ||||| ||||| || || | ||| Sbjct 639525 GGGCGTATAGCAGGATTGGAAGTTCTCCGCATTATAAATGAGCCAACTGCTGCATCCCTT 639584 Query 474857 GCTTATGGTCTTGATAAGAA 474876 ||||||||| |||| ||||| Sbjct 639585 GCTTATGGTTTTGAGAAGAA 639604 >seq4137 Length=326916 Score = 98.7 bits (108), Expect = 6e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| || || || ||||| || || | || || || || |||| Sbjct 320820 ATGCCGTTGTCACTGTTCCTGCCTACTTCAATGACTCCCAGAGGCAGGCCACCAAGGATG 320761 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| ||||||||||| | || || || |||||||| || ||||| || Sbjct 320760 CTGGAGTGATTGCTGGTCTTAATGTCATGCGGATCATCAATGAACCGACTGCAGCGGCGA 320701 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||||||||| ||||| Sbjct 320700 TTGCATATGGTCTTGACAAGAA 320679 >seq4493 Length=164055 Score = 95.1 bits (104), Expect = 8e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || ||||| ||||| ||||| || || || | || || ||||| ||||| ||| Sbjct 96193 AGGCGGAGGACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTG 96134 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || ||||| || ||||| |||||||| || || ||||| || || || ||| Sbjct 96133 CCATCCTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCC 96074 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 |||||||| ||||| |||||| ||||| || |||| | |||||||| Sbjct 96073 TTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCCACCTCAAGGGTG 96014 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || | ||||| || || || || Sbjct 96013 ATAGTCTTGCCAGTCAATGTCTTCACAAAGATCTG 95979 Score = 89.7 bits (98), Expect = 3e-12 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || ||||| ||||||||||| || || || | || || ||||| || || | | Sbjct 95965 AGGCGGAGGACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGG 95906 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| || ||||| || ||||| || || || || ||||| || ||| Sbjct 95905 CCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGAATACCCTCC 95846 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGT 480733 ||||| || ||||| ||||| ||||| || |||| | | | || ||||| Sbjct 95845 TTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAAGACTCCA-CCTCGAGGGT 95787 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || |||||||| ||||| || || Sbjct 95786 GATAGTCTTGCCAGTCAGAGTCTTGACGAAGATCTG 95751 >seq3785 Length=445553 Score = 87.8 bits (96), Expect = 1e-11 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 290842 AGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATC 290901 ||| || |||||||||||||| || ||| |||||||| || | ||| | | ||| Sbjct 253635 AGCAGCAGTTGGTTCATTTATGATCCTTTGGACATCAAGTCCAGAAATACGACCAGCATC 253694 Query 290902 TAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCTTTT 290959 ||||||||||| || |||||||| |||||||| || |||||||| ||||| ||| Sbjct 253695 CTTGGTTGCCTGGCGCTGTGCATCATTGAAATAAGCTGGAACTGTAATCACAGCCTTT 253752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267985229479256