Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq4204 502 8e-138 seq3130 390 3e-104 seq3676 304 4e-78 seq4136 156 1e-33 seq203 109 2e-19 seq4428 100 9e-17 seq4131 80.6 8e-11 >seq4204 Length=279751 Score = 502 bits (556), Expect = 8e-138 Identities = 705/984 (72%), Gaps = 29/984 (3%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| |||||||| ||||| | ||||| || Sbjct 215780 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 215839 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | |||| Sbjct 215840 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAAGTACA-- 215897 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| |||||||| || || || ||||||||||| || || | || || Sbjct 215898 -GATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 215956 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || |||||||||||||||||||| |||| | | ||||| Sbjct 215957 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 216016 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 ||| |||||||| |||||||| | || |||||||| |||||||| || ||||||||||| Sbjct 216017 AAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATA 216076 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 |||||||| ||||| |||||| | || || | || ||| ||| ||||| ||||| Sbjct 216077 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTC 216136 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 216137 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 216193 Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 |||||| || || ||||| | ||| || || |||||||||||||| ||||| || || || Sbjct 216194 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTG 216253 Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 |||||| | ||| || ||||||||||| || || | ||||||||||||||||||||| Sbjct 216254 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 216313 Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAAT 18426 ||||| |||| |||||||| | ||||| | |||| |||| ||| Sbjct 216314 TCCTTGACCAATAGGATAAATCAAGAAA-------ACAGCAGTAGCTA---------AAT 216357 Query 18427 AAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA 18486 | |||||| |||||| || |||||||| || | |||| |||||||| | || |||| Sbjct 216358 ATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCA 216417 Query 18487 TGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTAT 18546 | ||| || | || | | ||||| | ||||| || | ||| || || || || | Sbjct 216418 TATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTGT 216477 Query 18547 ATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGT 18606 |||||||||| || | | |||||||||||| |||||||| ||||| | ||||| || Sbjct 216478 ATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCG 216537 Query 18607 TAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGA 18666 ||| | || | || || || || || || ||||||||||| ||||| | | || | Sbjct 216538 CAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACTAGAAA 216597 Query 18667 CAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATG 18726 ||||||||||||||||||| || || || |||| || | | || || || | |||| Sbjct 216598 CAGGCTCACGAATACCATCAATATCTACTAGAGGGGCTGTGATGAAGGCGATAATAAATA 216657 Query 18727 CTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGC 18786 | | || ||| || || | | ||||||||| | || || ||||| || | ||| || | Sbjct 216658 CAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGAC 216717 Query 18787 GGTTGTTTGTACTCGTAACCCAGT 18810 |||| | || || || | ||||| Sbjct 216718 GGTTTTCGGTGCTAGTTATCCAGT 216741 >seq3130 Length=1765 Score = 390 bits (432), Expect = 3e-104 Identities = 506/688 (74%), Gaps = 12/688 (2%) Strand=Plus/Plus Query 18108 CCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTC 18167 |||||||| || ||||||||| |||||||| ||||| |||||| | || |||| || Sbjct 656 CCATGAGCGGCCACAATATTAA--GTCTCTTCCTCTTGACCAAATCTGTAACCATCATTA 713 Query 18168 TGAGACTCAAGCTCAGTCGTTTCTCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGC 18224 ||| ||| ||||| ||||| || || || | |||| || |||| || || Sbjct 714 GCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGT 770 Query 18225 ATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGC 18284 |||||| ||||| | ||||||||||| || || ||||| | ||| || || |||||| Sbjct 771 ATAGCACTGAATAGGGAACCACCGAATACACCAGCTACACCTAACATGTGAAATGGATGC 830 Query 18285 ATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCA 18344 |||||||| ||||| || || |||||||| | ||| || ||||||||||| || || Sbjct 831 ATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCT 890 Query 18345 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGA 18402 | ||||||||||||||||||||| ||||| |||| |||||||| | ||||| || | || Sbjct 891 AAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAA-ACAGCAGT 949 Query 18403 AGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTAT 18462 | |||||||| || || || ||||| |||||| |||||| || |||||||| || | Sbjct 950 A-GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGA 1008 Query 18463 AACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAA 18522 |||| |||||||| | || ||||| ||| || | || | | ||||| | |||| Sbjct 1009 AACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAA 1068 Query 18523 TGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTG 18582 | || | ||| || || || || ||||||||||| || | | |||||||||||| |||| Sbjct 1069 TTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTG 1128 Query 18583 GGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGT 18642 |||| ||||| | ||||| || ||| | || | || || || || || || |||| Sbjct 1129 GGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGT 1188 Query 18643 TTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAG 18702 ||||||| ||||| | || || |||||||||||||||||||| || || || ||||| | Sbjct 1189 TTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGG 1248 Query 18703 CAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTA 18762 | || | || || || | |||| | | || ||| || || | | ||||||||| | | Sbjct 1249 CTGCGATGAAGGCGATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAA 1308 Query 18763 CCCCAAACCACCCCACGTAGAGGCGGTT 18790 | || ||||| || | ||| || ||||| Sbjct 1309 CACCGAACCATCCGATGTAAAGACGGTT 1336 >seq3676 Length=461187 Score = 304 bits (336), Expect = 4e-78 Identities = 415/574 (72%), Gaps = 9/574 (2%) Strand=Plus/Minus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || ||||||||| ||||| | || || || | || ||||| | ||| | || Sbjct 288782 CCATGCATAGCACTGAATAGGGAACCGCCAAACA-----GCTACACCTAACATGCGAAAT 288728 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 |||||||||||||| ||||| || | |||||||| | ||| || ||||||||||| Sbjct 288727 GGATGCATAAGGATGTTGTGCTCTACCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 288668 Query 18339 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATAC 18397 || || | ||||||||||||||||||||| ||||| |||| |||||||| | ||||| || Sbjct 288667 ATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAA-AC 288609 Query 18398 TG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTA 18456 | || || || |||| || || || ||||| |||||| |||||| || |||||||| | Sbjct 288608 AGCAGTAG-CAACTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCA 288550 Query 18457 GTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGA 18516 | | |||| |||||||| | || ||||| ||| || | || | | ||||| | Sbjct 288549 GACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTA 288490 Query 18517 ACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCC 18576 ||||| || | ||| || || || || ||||||||||| || | | ||||||||||| Sbjct 288489 GAACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCC 288430 Query 18577 AGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGA 18636 | |||||||| ||||| | ||||| || ||| | || | || || || || || | Sbjct 288429 AAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAA 288370 Query 18637 TGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGG 18696 | ||||||||||| ||||| | | | |||||||||||||||||||| || || || | Sbjct 288369 TATTGTTTCCATAAAGTAAAGAATCGAAAACAGGCTCACGAATACCATCAATATCTACTG 288310 Query 18697 GAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCA 18756 |||| || || | || || || | |||| | | || ||| ||||| | | |||||||| Sbjct 288309 GAGGGGCTGCGATGAAGGCGATAATAAATACAGAAGTTGCAGTTAATAAGGTAGGGATCA 288250 Query 18757 TAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 | | || | |||| || | ||| || ||||| Sbjct 288249 TCAAAACATCGGACCATCCGATGTAAAGACGGTT 288216 >seq4136 Length=310402 Score = 156 bits (172), Expect = 1e-33 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 ||||||||||| |||||||| || || || ||||||||||| || || | || || Sbjct 3074 GATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTG 3133 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTA 18071 | ||| || | || |||||||||||||||||||| |||| | | |||||| Sbjct 3134 AACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTA 3193 Query 18072 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATAC 18131 || |||||||| |||||||| | || |||||||| |||||||| || ||||||||||| Sbjct 3194 AAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATAA 3253 Query 18132 GTCTCTTCTTCTTGGCCAAAT 18152 |||||||| ||||| |||||| Sbjct 3254 GTCTCTTCCTCTTGACCAAAT 3274 >seq203 Length=971741 Score = 109 bits (120), Expect = 2e-19 Identities = 122/162 (75%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| |||||||| ||||| | ||||| || Sbjct 778017 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 777958 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 777957 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACA-- 777900 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGT 17992 ||||||||||| |||||||| || || || ||||||||||| Sbjct 777899 -GATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGT 777859 >seq4428 Length=185154 Score = 100 bits (110), Expect = 9e-17 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || |||| |||| ||||| | || |||||||| || || ||||| | ||| || || Sbjct 19559 CCATGCAAAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAAT 19618 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACC-GCT 18337 | |||||||||||| |||| || || |||||||| | ||| || ||||||||||| | | Sbjct 19619 GAATGCATAAGGATGTTGTACTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 19678 Query 18338 AATACCAAGAGGCATACCATCA 18359 | | | || ||||||||||||| Sbjct 19679 ATTTCTAA-AGGCATACCATCA 19699 >seq4131 Length=315116 Score = 80.6 bits (88), Expect = 8e-11 Identities = 120/169 (71%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 18424 AATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTC 18483 |||| |||||| |||||| || |||||||| || || |||| |||||||| | || | Sbjct 226522 AATATGCAACAACAATCCAAGGACGCATACCCAGACTGAAACTCAGTTCCCACTCACGAC 226463 Query 18484 CCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGT 18543 |||| || || | | |||| ||| | ||||| || | ||| || || | | Sbjct 226462 CCATACAACAAGCTAG-----TAAGAA-GTGTAGAACAATTAGCTCATAAGGGCCGCTAT 226409 Query 18544 TATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTG 18592 | ||||||||||| || | |||||||||||| ||| |||| ||||| Sbjct 226408 TGTATAACCACTCATCAACATATGCAGCTTCCCAAATTAGGTAAAAGTG 226360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151310274391068