Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= NC_020837.1
Length=198013
Score E
Sequences producing significant alignments: (Bits) Value
seq4204 500 1e-136
seq3130 401 8e-107
seq3676 295 8e-75
seq203 168 8e-37
seq2035 123 3e-23
seq4136 120 4e-22
seq342 98.7 1e-15
seq4088 82.4 1e-10
>seq4204
Length=279751
Score = 500 bits (554), Expect = 1e-136
Identities = 712/1008 (71%), Gaps = 20/1008 (2%)
Strand=Plus/Plus
Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230
|||||| ||||| || |||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct 215777 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 215836
Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290
| ||| ||||||| | || ||||| || || | || ||||| || | |||||| |
Sbjct 215837 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAAGTAC 215896
Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350
|| |||||||| ||||||||||| |||||||| ||||| || |||| ||| | || ||
Sbjct 215897 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 215956
Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410
|||||| || || ||||| || | ||||||||
Sbjct 215957 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 216016
Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470
|| || ||||||||||| || || || ||||||||||||||||| || || || ||
Sbjct 216017 AAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATA 216076
Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530
|||||||||||||| || || ||||||| | || ||||||| ||||||| || ||
Sbjct 216077 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTC 216136
Query 103531 AC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589
| || | | | | || || || | ||||| |||||||||||||| || ||||| ||||
Sbjct 216137 CCTGATCAAACTA-GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGA 216195
Query 103590 AGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGA 103649
| || ||||| || || | |||||| || || ||||| || ||||| || || || ||||
Sbjct 216196 ATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGA 216255
Query 103650 AGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAAC 103709
| || | ||| ||||||| || || || || || ||||||||| |||| ||||| |
Sbjct 216256 ATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTC 216315
Query 103710 CTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATG 103769
||||||||| || || | |||||| | || ||| ||| | ||||
Sbjct 216316 CTTGACCAATAGGATAAATCAAGAAAA---------------CAGCAGTAGCTAAATATG 216360
Query 103770 CGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATAT 103829
| ||| ||||| || ||||| ||||||||| | || |||||||||||| |||||||
Sbjct 216361 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATAT 216420
Query 103830 ATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACA 103889
| | | |||| | |||||| | || | || | |||| || || || || |
Sbjct 216421 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTGTATA 216480
Query 103890 GCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGG 103949
||||||||||| |||||| ||||||||||| || || ||||| | || || || |
Sbjct 216481 ACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAG 216540
Query 103950 AGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGG 104009
| | |||| || ||||||||||| || ||||| || || | | |||| || || |
Sbjct 216541 AAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACTAGAAACAG 216600
Query 104010 GTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAG 104068
| |||||||| || || ||||| || |||| |||| | ||| || | || || |||
Sbjct 216601 GCTCACGAATACCATCAATATCTACTAGAGGGGCTGTGATGAAGGCGATAATAAATACAG 216660
Query 104069 ATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGG 104128
| ||||| | ||| | || |||||||||| ||||||||||| || | || ||||||
Sbjct 216661 A-AGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGG 216719
Query 104129 TTGTTTGTCGATGTAACCCACTCGCAGAAGTTATCCCACGAGGATTGT 104176
|| | || || | ||| | ||||||| | ||||| ||| ||||
Sbjct 216720 TTTTCGGTGCTAGTTATCCAGTTGCAGAAGCGACCCCAC-AGGCTTGT 216766
>seq3130
Length=1765
Score = 401 bits (444), Expect = 8e-107
Identities = 505/687 (74%), Gaps = 6/687 (1%)
Strand=Plus/Plus
Query 103446 AACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGT 103505
||||||||||||| || || || | |||||||||||||| || || ||||||||| |
Sbjct 654 AACCATGAGCGGCCACAATATT--AAGTCTCTTCCTCTTGACCAAATCTGTAACCATCAT 711
Query 103506 TTTGAGATTCAGTTTCAGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGC 103564
| ||||||| ||||||| || || | || | | | | || || || | ||||| ||
Sbjct 712 TAGCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTA-GAGGTTACCAAGGAACCATGT 770
Query 103565 ATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGC 103624
||||||||||| || ||||||||||| || ||||| || || | |||||| || || |||
Sbjct 771 ATAGCACTGAATAGGGAACCACCGAATACACCAGCTACACCTAACATGTGAAATGGATGC 830
Query 103625 ATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCC 103684
|| || ||||| || || || ||||| || | ||| ||||||| || || || || ||
Sbjct 831 ATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCT 890
Query 103685 AAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGAC 103744
||||||||| |||| ||||| |||||||||| || || | |||||| || || |
Sbjct 891 AAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTA 950
Query 103745 GCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAG 103804
||||| ||||||||||| || ||||| ||| ||||| || ||||| ||||||||| |
Sbjct 951 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 1010
Query 103805 GACAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACA 103864
|| |||||||||||| |||||||| | | |||| | |||||| | || |
Sbjct 1011 CTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 1070
Query 103865 AGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGA 103924
|| | |||| || || || || | ||||||||||| |||||| ||||||||||| ||
Sbjct 1071 AGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGG 1130
Query 103925 TAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTA 103984
|| ||||| | || || || || | |||| || ||||||||||| || |||||
Sbjct 1131 TAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTT 1190
Query 103985 CCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCT 104044
|| || | | ||||||| || || |||||||| || || ||||| || ||||| |||
Sbjct 1191 CCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCT 1250
Query 104045 GCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCAC 104103
|| | ||| || | || || |||| ||||| | ||| | || |||||||||| ||
Sbjct 1251 GCGATGAAGGCGATAATAAATACAGA-AGTTGCAGTCAATAAGGTAGGGATCATCAAAAC 1309
Query 104104 ACCGAACCAACCAACATAGAGACGGTT 104130
||||||||| || | || ||||||||
Sbjct 1310 ACCGAACCATCCGATGTAAAGACGGTT 1336
>seq3676
Length=461187
Score = 295 bits (326), Expect = 8e-75
Identities = 443/623 (71%), Gaps = 10/623 (2%)
Strand=Plus/Minus
Query 103556 GAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGG 103615
||||| |||||||||||||| || ||||| || || |||| || || | |||| |
Sbjct 288785 GAACCATGCATAGCACTGAATAGGGAACCGCCAAA-----CAGCTACACCTAACATGCGA 288731
Query 103616 AAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCC 103675
|| || ||||| || ||||| || || | ||||| || | ||| ||||||| || ||
Sbjct 288730 AATGGATGCATAAGGATGTTGTGCTCTACCTGGAATACAATCATAAAGTTGAAAGTACCA 288671
Query 103676 GAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAAT 103735
|| || || ||||||||| |||| ||||| |||||||||| || || | ||||||
Sbjct 288670 GATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAA 288611
Query 103736 ACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCC 103795
|| || | ||| | ||||||||||| || ||||| ||| ||||| || ||||| |||
Sbjct 288610 ACAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCC 288551
Query 103796 AGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGG 103855
|||||| | || |||||||||||| |||||||| | | |||| | ||||||
Sbjct 288550 AGACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGT 288491
Query 103856 AATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCC 103915
| || | || | |||| || || || || | ||||||||||| |||||| ||||||
Sbjct 288490 AGAACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCC 288431
Query 103916 CAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATG 103975
||||| || || ||||| | || || || || | |||| || |||||||||||
Sbjct 288430 CAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATA 288371
Query 103976 ATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACG 104035
|| ||||| || || | | ||| | || || |||||||| || || ||||| ||
Sbjct 288370 ATATTGTTTCCATAAAGTAAAGAATCGAAAACAGGCTCACGAATACCATCAATATCTACT 288311
Query 104036 GGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGAT 104094
||||| ||||| | ||| || | || || |||| ||||| | || | || |||||
Sbjct 288310 GGAGGGGCTGCGATGAAGGCGATAATAAATACAGA-AGTTGCAGTTAATAAGGTAGGGAT 288252
Query 104095 CATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTGT-CGATGTAACCCACTCGC 104153
||||| ||| || |||| || | || |||||||| | || | || | | ||| | ||
Sbjct 288251 CATCAAAACATCGGACCATCCGATGTAAAGACGGTTTTCGGTGCTAT-TTATCCAGTTGC 288193
Query 104154 AGAAGTTATCCCACGAGGATTGT 104176
||||| | ||||| ||| ||||
Sbjct 288192 AGAAGCGACCCCAC-AGGCTTGT 288171
>seq203
Length=971741
Score = 168 bits (186), Expect = 8e-37
Identities = 156/198 (79%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230
|||||| ||||| || |||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct 778020 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 777961
Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290
| ||| ||||||| | || ||||| || || | || ||||| || | ||||| |
Sbjct 777960 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 777901
Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350
|| |||||||| ||||||||||| |||||||| ||||| || |||| ||| | || ||
Sbjct 777900 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 777841
Query 103351 GAACCAGATACCCACTAC 103368
|||||| || || |||||
Sbjct 777840 GAACCAAATCCCTACTAC 777823
>seq2035
Length=9416
Score = 123 bits (136), Expect = 3e-23
Identities = 139/186 (75%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 101793 ACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTCTCGAACTCTGGATCTTCTGCTGC 101852
||| ||||| || | || || || |||||||| ||||| || || |||||||| |||||
Sbjct 3652 ACCCTCATTTAAAACAATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATCTTCCGCTGC 3711
Query 101853 TCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACC 101912
| ||| || | ||| ||||||||||| ||||| ||||| ||||| || || | | ||
Sbjct 3712 ACGGATTTCCTAGGAAACAAAGTCATAGGCACGTAGGTTCAGAGCTAGGCCGACTACGCC 3771
Query 101913 GATGGAACTTGTCCACAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAACCACCT 101972
|| | ||| |||| | ||| | || || ||||| ||||||||||||| ||||| |
Sbjct 3772 AATAGCACTCATCCATAAACCGGTGACGGGTACAAATAGCATAAAGAAATATAACCAACG 3831
Query 101973 CTTATT 101978
|||||
Sbjct 3832 TTTATT 3837
>seq4136
Length=310402
Score = 120 bits (132), Expect = 4e-22
Identities = 166/242 (69%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 103250 TCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGACTGGTTGAAGTTGAAT 103309
|| ||||| || || | || ||||| || | ||||| | || |||||||| ||||||
Sbjct 3032 TCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTGAAT 3091
Query 103310 CCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGATACCCACTACT 103369
||||| |||||||| ||||| || |||| ||| | || |||||||| || || |||||
Sbjct 3092 CCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACA 3151
Query 103370 GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAATGATGCGTATTGGAAG 103429
|| | |||||||| || || |||||||||
Sbjct 3152 GGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAG 3211
Query 103430 ATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCCG 103489
|| || || || ||||||||||||||||| || || || || |||||||||||||| ||
Sbjct 3212 ATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATAAGTCTCTTCCTCTTGACCA 3271
Query 103490 AA 103491
||
Sbjct 3272 AA 3273
>seq342
Length=66534
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/199 (71%), Gaps = 1/199 (1%)
Strand=Plus/Minus
Query 102811 CACA-TCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGT 102869
|||| ||||| | ||||| ||||||||||| |||||| | || || | |||| | |
Sbjct 25839 CACAGTCCGATTTCGGGTAGGCCACGCAGGTGAGAACATAGCCGTCTGCCTGTTGCGCAT 25780
Query 102870 CATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAG 102929
| || || || || |||| |||||| ||| | || | |||||| || |||||||| |
Sbjct 25779 CGTCGAGGAATGACCCATCTGATTGATCAACAATGCCAGCTTCAATTTTGCCAGCACAGG 25720
Query 102930 TAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGT 102989
| || || || || ||||| || || || ||||| || || || ||| || |||| ||
Sbjct 25719 TGGAGCAAGCCCCTGCACGGCATGAGTATGGCAGCTCCACTCCAGCTGACTCGGCAGAGT 25660
Query 102990 CTAGAATATATTGATCATC 103008
| || || || ||||||
Sbjct 25659 CCAGGATGTAGGCATCATC 25641
>seq4088
Length=340663
Score = 82.4 bits (90), Expect = 1e-10
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 102189 CGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAA 102248
|||||| ||||| || || || | |||||| | ||||| |||||| ||||| || |||||
Sbjct 183846 CGTCCAATTATGAAATCCTTGGAAGAAGAGAATGAATCGAAATATTGCTGCTACGCCAAA 183905
Query 102249 CGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAA 102296
|||||||||||||||| || ||||| | ||||| || | |||
Sbjct 183906 ACTCGGCGCAAAGAACCAACCAGATTGTCCCAATGGATAAATCAAAAA 183953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633477790643760
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