Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq4204 500 1e-136 seq3130 401 8e-107 seq3676 295 8e-75 seq203 168 8e-37 seq2035 123 3e-23 seq4136 120 4e-22 seq342 98.7 1e-15 seq4088 82.4 1e-10 >seq4204 Length=279751 Score = 500 bits (554), Expect = 1e-136 Identities = 712/1008 (71%), Gaps = 20/1008 (2%) Strand=Plus/Plus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| ||||| || |||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 215777 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 215836 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 | ||| ||||||| | || ||||| || || | || ||||| || | |||||| | Sbjct 215837 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAAGTAC 215896 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350 || |||||||| ||||||||||| |||||||| ||||| || |||| ||| | || || Sbjct 215897 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 215956 Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410 |||||| || || ||||| || | |||||||| Sbjct 215957 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 216016 Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470 || || ||||||||||| || || || ||||||||||||||||| || || || || Sbjct 216017 AAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATA 216076 Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530 |||||||||||||| || || ||||||| | || ||||||| ||||||| || || Sbjct 216077 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTC 216136 Query 103531 AC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589 | || | | | | || || || | ||||| |||||||||||||| || ||||| |||| Sbjct 216137 CCTGATCAAACTA-GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGA 216195 Query 103590 AGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGA 103649 | || ||||| || || | |||||| || || ||||| || ||||| || || || |||| Sbjct 216196 ATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGA 216255 Query 103650 AGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAAC 103709 | || | ||| ||||||| || || || || || ||||||||| |||| ||||| | Sbjct 216256 ATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTC 216315 Query 103710 CTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATG 103769 ||||||||| || || | |||||| | || ||| ||| | |||| Sbjct 216316 CTTGACCAATAGGATAAATCAAGAAAA---------------CAGCAGTAGCTAAATATG 216360 Query 103770 CGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATAT 103829 | ||| ||||| || ||||| ||||||||| | || |||||||||||| ||||||| Sbjct 216361 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATAT 216420 Query 103830 ATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACA 103889 | | | |||| | |||||| | || | || | |||| || || || || | Sbjct 216421 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTGTATA 216480 Query 103890 GCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGG 103949 ||||||||||| |||||| ||||||||||| || || ||||| | || || || | Sbjct 216481 ACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAG 216540 Query 103950 AGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGG 104009 | | |||| || ||||||||||| || ||||| || || | | |||| || || | Sbjct 216541 AAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACTAGAAACAG 216600 Query 104010 GTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAG 104068 | |||||||| || || ||||| || |||| |||| | ||| || | || || ||| Sbjct 216601 GCTCACGAATACCATCAATATCTACTAGAGGGGCTGTGATGAAGGCGATAATAAATACAG 216660 Query 104069 ATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGG 104128 | ||||| | ||| | || |||||||||| ||||||||||| || | || |||||| Sbjct 216661 A-AGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGG 216719 Query 104129 TTGTTTGTCGATGTAACCCACTCGCAGAAGTTATCCCACGAGGATTGT 104176 || | || || | ||| | ||||||| | ||||| ||| |||| Sbjct 216720 TTTTCGGTGCTAGTTATCCAGTTGCAGAAGCGACCCCAC-AGGCTTGT 216766 >seq3130 Length=1765 Score = 401 bits (444), Expect = 8e-107 Identities = 505/687 (74%), Gaps = 6/687 (1%) Strand=Plus/Plus Query 103446 AACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGT 103505 ||||||||||||| || || || | |||||||||||||| || || ||||||||| | Sbjct 654 AACCATGAGCGGCCACAATATT--AAGTCTCTTCCTCTTGACCAAATCTGTAACCATCAT 711 Query 103506 TTTGAGATTCAGTTTCAGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGC 103564 | ||||||| ||||||| || || | || | | | | || || || | ||||| || Sbjct 712 TAGCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTA-GAGGTTACCAAGGAACCATGT 770 Query 103565 ATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGC 103624 ||||||||||| || ||||||||||| || ||||| || || | |||||| || || ||| Sbjct 771 ATAGCACTGAATAGGGAACCACCGAATACACCAGCTACACCTAACATGTGAAATGGATGC 830 Query 103625 ATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCC 103684 || || ||||| || || || ||||| || | ||| ||||||| || || || || || Sbjct 831 ATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCT 890 Query 103685 AAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGAC 103744 ||||||||| |||| ||||| |||||||||| || || | |||||| || || | Sbjct 891 AAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTA 950 Query 103745 GCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAG 103804 ||||| ||||||||||| || ||||| ||| ||||| || ||||| ||||||||| | Sbjct 951 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 1010 Query 103805 GACAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACA 103864 || |||||||||||| |||||||| | | |||| | |||||| | || | Sbjct 1011 CTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 1070 Query 103865 AGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGA 103924 || | |||| || || || || | ||||||||||| |||||| ||||||||||| || Sbjct 1071 AGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGG 1130 Query 103925 TAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTA 103984 || ||||| | || || || || | |||| || ||||||||||| || ||||| Sbjct 1131 TAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTT 1190 Query 103985 CCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCT 104044 || || | | ||||||| || || |||||||| || || ||||| || ||||| ||| Sbjct 1191 CCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCT 1250 Query 104045 GCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCAC 104103 || | ||| || | || || |||| ||||| | ||| | || |||||||||| || Sbjct 1251 GCGATGAAGGCGATAATAAATACAGA-AGTTGCAGTCAATAAGGTAGGGATCATCAAAAC 1309 Query 104104 ACCGAACCAACCAACATAGAGACGGTT 104130 ||||||||| || | || |||||||| Sbjct 1310 ACCGAACCATCCGATGTAAAGACGGTT 1336 >seq3676 Length=461187 Score = 295 bits (326), Expect = 8e-75 Identities = 443/623 (71%), Gaps = 10/623 (2%) Strand=Plus/Minus Query 103556 GAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGG 103615 ||||| |||||||||||||| || ||||| || || |||| || || | |||| | Sbjct 288785 GAACCATGCATAGCACTGAATAGGGAACCGCCAAA-----CAGCTACACCTAACATGCGA 288731 Query 103616 AAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCC 103675 || || ||||| || ||||| || || | ||||| || | ||| ||||||| || || Sbjct 288730 AATGGATGCATAAGGATGTTGTGCTCTACCTGGAATACAATCATAAAGTTGAAAGTACCA 288671 Query 103676 GAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAAT 103735 || || || ||||||||| |||| ||||| |||||||||| || || | |||||| Sbjct 288670 GATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAA 288611 Query 103736 ACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCC 103795 || || | ||| | ||||||||||| || ||||| ||| ||||| || ||||| ||| Sbjct 288610 ACAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCC 288551 Query 103796 AGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGG 103855 |||||| | || |||||||||||| |||||||| | | |||| | |||||| Sbjct 288550 AGACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGT 288491 Query 103856 AATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCC 103915 | || | || | |||| || || || || | ||||||||||| |||||| |||||| Sbjct 288490 AGAACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCC 288431 Query 103916 CAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATG 103975 ||||| || || ||||| | || || || || | |||| || ||||||||||| Sbjct 288430 CAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATA 288371 Query 103976 ATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACG 104035 || ||||| || || | | ||| | || || |||||||| || || ||||| || Sbjct 288370 ATATTGTTTCCATAAAGTAAAGAATCGAAAACAGGCTCACGAATACCATCAATATCTACT 288311 Query 104036 GGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGAT 104094 ||||| ||||| | ||| || | || || |||| ||||| | || | || ||||| Sbjct 288310 GGAGGGGCTGCGATGAAGGCGATAATAAATACAGA-AGTTGCAGTTAATAAGGTAGGGAT 288252 Query 104095 CATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTGT-CGATGTAACCCACTCGC 104153 ||||| ||| || |||| || | || |||||||| | || | || | | ||| | || Sbjct 288251 CATCAAAACATCGGACCATCCGATGTAAAGACGGTTTTCGGTGCTAT-TTATCCAGTTGC 288193 Query 104154 AGAAGTTATCCCACGAGGATTGT 104176 ||||| | ||||| ||| |||| Sbjct 288192 AGAAGCGACCCCAC-AGGCTTGT 288171 >seq203 Length=971741 Score = 168 bits (186), Expect = 8e-37 Identities = 156/198 (79%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| ||||| || |||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 778020 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 777961 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 | ||| ||||||| | || ||||| || || | || ||||| || | ||||| | Sbjct 777960 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 777901 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350 || |||||||| ||||||||||| |||||||| ||||| || |||| ||| | || || Sbjct 777900 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 777841 Query 103351 GAACCAGATACCCACTAC 103368 |||||| || || ||||| Sbjct 777840 GAACCAAATCCCTACTAC 777823 >seq2035 Length=9416 Score = 123 bits (136), Expect = 3e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 101793 ACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTCTCGAACTCTGGATCTTCTGCTGC 101852 ||| ||||| || | || || || |||||||| ||||| || || |||||||| ||||| Sbjct 3652 ACCCTCATTTAAAACAATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATCTTCCGCTGC 3711 Query 101853 TCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACC 101912 | ||| || | ||| ||||||||||| ||||| ||||| ||||| || || | | || Sbjct 3712 ACGGATTTCCTAGGAAACAAAGTCATAGGCACGTAGGTTCAGAGCTAGGCCGACTACGCC 3771 Query 101913 GATGGAACTTGTCCACAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAACCACCT 101972 || | ||| |||| | ||| | || || ||||| ||||||||||||| ||||| | Sbjct 3772 AATAGCACTCATCCATAAACCGGTGACGGGTACAAATAGCATAAAGAAATATAACCAACG 3831 Query 101973 CTTATT 101978 ||||| Sbjct 3832 TTTATT 3837 >seq4136 Length=310402 Score = 120 bits (132), Expect = 4e-22 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 103250 TCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGACTGGTTGAAGTTGAAT 103309 || ||||| || || | || ||||| || | ||||| | || |||||||| |||||| Sbjct 3032 TCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTGAAT 3091 Query 103310 CCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGATACCCACTACT 103369 ||||| |||||||| ||||| || |||| ||| | || |||||||| || || ||||| Sbjct 3092 CCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACA 3151 Query 103370 GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAATGATGCGTATTGGAAG 103429 || | |||||||| || || ||||||||| Sbjct 3152 GGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAG 3211 Query 103430 ATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCCG 103489 || || || || ||||||||||||||||| || || || || |||||||||||||| || Sbjct 3212 ATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATAAGTCTCTTCCTCTTGACCA 3271 Query 103490 AA 103491 || Sbjct 3272 AA 3273 >seq342 Length=66534 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 102811 CACA-TCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGT 102869 |||| ||||| | ||||| ||||||||||| |||||| | || || | |||| | | Sbjct 25839 CACAGTCCGATTTCGGGTAGGCCACGCAGGTGAGAACATAGCCGTCTGCCTGTTGCGCAT 25780 Query 102870 CATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAG 102929 | || || || || |||| |||||| ||| | || | |||||| || |||||||| | Sbjct 25779 CGTCGAGGAATGACCCATCTGATTGATCAACAATGCCAGCTTCAATTTTGCCAGCACAGG 25720 Query 102930 TAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGT 102989 | || || || || ||||| || || || ||||| || || || ||| || |||| || Sbjct 25719 TGGAGCAAGCCCCTGCACGGCATGAGTATGGCAGCTCCACTCCAGCTGACTCGGCAGAGT 25660 Query 102990 CTAGAATATATTGATCATC 103008 | || || || |||||| Sbjct 25659 CCAGGATGTAGGCATCATC 25641 >seq4088 Length=340663 Score = 82.4 bits (90), Expect = 1e-10 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 102189 CGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAA 102248 |||||| ||||| || || || | |||||| | ||||| |||||| ||||| || ||||| Sbjct 183846 CGTCCAATTATGAAATCCTTGGAAGAAGAGAATGAATCGAAATATTGCTGCTACGCCAAA 183905 Query 102249 CGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAA 102296 |||||||||||||||| || ||||| | ||||| || | ||| Sbjct 183906 ACTCGGCGCAAAGAACCAACCAGATTGTCCCAATGGATAAATCAAAAA 183953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633477790643760