Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq4204 459 8e-125 seq3130 356 7e-94 seq3676 255 2e-63 seq4136 174 5e-39 seq203 104 7e-18 seq292 84.2 6e-12 >seq4204 Length=279751 Score = 459 bits (508), Expect = 8e-125 Identities = 677/959 (71%), Gaps = 21/959 (2%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||||||||| || || || || ||||| || || | ||||| || Sbjct 215781 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 215840 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||| | || |||||||| || || || || | || | | | || | |||| Sbjct 215841 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAAGTACAGAT 215900 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||| || || | |||||||||||| ||| | || | |||| ||| Sbjct 215901 TGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 215960 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 ||||| ||||| |||||||| ||||| | ||||| || | | ||| || || ||||| Sbjct 215961 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 216020 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || ||||| || || ||||| || |||||||| |||||| Sbjct 216021 CTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATAAGTC 216080 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 ||||||||||||||||| ||||||| | || || | | |||||| || || | Sbjct 216081 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTCCCTG 216140 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| | ||| ||||||||| ||| | || || ||||| Sbjct 216141 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 216200 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || ||||| | ||||||||| ||||||||||| || |||||||| |||||||| || Sbjct 216201 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACA 216260 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | ||| ||||||| || || ||||| || || |||||| ||||||| ||| || || Sbjct 216261 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 216320 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 |||| ||||||| | ||| |||||||| ||| | || |||||| Sbjct 216321 CCAATAGGATAAATCAAGAAAACAGCAGT---------------AGCTAAATATGCAACA 216365 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 ||||| || | ||| || || || | || ||||||||||| || ||||| ||| | Sbjct 216366 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAA 216425 Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190 || |||| | |||||| | || | || | | || ||||| ||||| | ||| Sbjct 216426 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTGTATAACCAC 216485 Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250 ||||||| | |||||||||||||||||||| ||||| | |||||| || | | Sbjct 216486 TCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTA 216545 Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310 |||| | ||| || || || || ||||| ||||| | | || | || || || || Sbjct 216546 GGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACTAGAAACAGGCTCA 216605 Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA---ACAAGTT 22367 || || ||||| || || || | || || | |||||||||||||| | ||||| Sbjct 216606 CGAATACCATCAATATCTACTAGAGGGGCTGTGATGAAGGCGATAATAAATACAGAAGTT 216665 Query 22368 GTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 | | | ||| ||| | || ||||| | || ||||||||||| | ||||||||||| Sbjct 216666 GCA--GTCAATAAGGTA-GGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTT 216721 >seq3130 Length=1765 Score = 356 bits (394), Expect = 7e-94 Identities = 493/686 (72%), Gaps = 8/686 (1%) Strand=Plus/Plus Query 21744 CCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTC 21803 || ||||| || |||||||| |||||||||||||||||||||| ||||||||| || Sbjct 656 CCATGAGCGGCCACAATATT--AAGTCTCTTCCTCTTGACCAAATCTGTAACCATCATTA 713 Query 21804 TGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATA 21863 || | | |||||| || || | || | || || |||| | ||| || ||| Sbjct 714 GCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGTATA 773 Query 21864 GCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATA 21923 ||| ||| | ||||| ||||| || || ||||| | ||||||||| ||||||||| Sbjct 774 GCACTGAATAGGGAACCACCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATA 833 Query 21924 AGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAG 21983 || || |||||||| |||||||| || | ||| ||||||| || || ||||| || || Sbjct 834 AGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAA 893 Query 21984 GGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCA 22043 |||||| ||||||| ||| || || |||| ||||||| | ||| |||||||| ||| Sbjct 894 GGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTAGCA 953 Query 22044 GCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTA 22103 || || |||||||| || || |||||| ||||| || | ||| || || || | || Sbjct 954 GCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTC 1013 Query 22104 AGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGT 22163 ||||||||||| || ||||| ||| | || |||| | |||||| | || | || Sbjct 1014 AGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGC 1073 Query 22164 TGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAG 22223 | | || ||||| ||||| | ||| ||||||| | |||||||||||||||||||| Sbjct 1074 TCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAA 1133 Query 22224 AAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCA 22283 ||||| | |||||| || | | |||| | ||| || || || || ||||| ||| Sbjct 1134 AAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCA 1193 Query 22284 TACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCA 22343 || | | || |||| || || || || || ||||| || || || || || || | Sbjct 1194 TAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTGCG 1253 Query 22344 ACAAAGGCGATAATAAA---ACAAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACT 22400 | |||||||||||||| | |||||| | | ||| ||| | || ||||| | || Sbjct 1254 ATGAAGGCGATAATAAATACAGAAGTTGCA--GTCAATAAGGTA-GGGATCATCAAAACA 1310 Query 22401 CCGAACCATCCTACATAAAGACGGTT 22426 ||||||||||| | ||||||||||| Sbjct 1311 CCGAACCATCCGATGTAAAGACGGTT 1336 >seq3676 Length=461187 Score = 255 bits (282), Expect = 2e-63 Identities = 380/536 (71%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 21894 GCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGC 21953 || ||||| | |||| |||| ||||||||||| || |||||||| ||||||| || | | Sbjct 288748 GCTACACCTAACATGCGAAATGGATGCATAAGGATGTTGTGCTCTACCTGGAATACAATC 288689 Query 21954 ATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCA 22013 || ||||||| || || ||||| || || |||||| ||||||| ||| || || ||| Sbjct 288688 ATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCA 288629 Query 22014 AACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAG 22073 | ||||||| | ||| |||||||| ||| | || |||||||| || || |||||| Sbjct 288628 ATAGGATAAATCAAGAAAACAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAGCA 288569 Query 22074 ATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG 22133 ||||| || | ||| || || || | || ||||||||||| || ||||| ||| | Sbjct 288568 ATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCT 288509 Query 22134 ACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCA 22193 || |||| | |||||| | || | || | | || ||||| ||||| | ||| ||| Sbjct 288508 ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCA 288449 Query 22194 TCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGA 22253 |||| | |||||||||||||||||||| ||||| | |||||| || | | ||| Sbjct 288448 TCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGA 288389 Query 22254 ACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGG 22313 | | ||| || || || || ||||| ||||| | | || | || || || || Sbjct 288388 ATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAATCGAAAACAGGCTCACGA 288329 Query 22314 ATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA---ACAAGTTGTA 22370 || ||||| || || || || || || | | |||||||||||||| | |||||| | Sbjct 288328 ATACCATCAATATCTACTGGAGGGGCTGCGATGAAGGCGATAATAAATACAGAAGTTGCA 288269 Query 22371 GCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 | || ||| | || ||||| | || || ||||||| | ||||||||||| Sbjct 288268 --GTTAATAAGGTA-GGGATCATCAAAACATCGGACCATCCGATGTAAAGACGGTT 288216 >seq4136 Length=310402 Score = 174 bits (192), Expect = 5e-39 Identities = 159/201 (79%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 21587 AGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGC 21646 ||||||||| || ||||| || || | |||||||||||| ||| | || | |||| Sbjct 3073 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 3132 Query 21647 AAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATT 21706 |||||||| ||||| |||||||| ||||| | ||||| || | | ||| || || || Sbjct 3133 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 3192 Query 21707 AAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTA 21766 ||| ||||||||||||||||| | || ||||| || || ||||| || |||||||| || Sbjct 3193 AAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATA 3252 Query 21767 AGTCTCTTCCTCTTGACCAAA 21787 ||||||||||||||||||||| Sbjct 3253 AGTCTCTTCCTCTTGACCAAA 3273 >seq203 Length=971741 Score = 104 bits (114), Expect = 7e-18 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||||||||| || || || || ||||| || || | ||||| || Sbjct 778016 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 777957 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||| | || |||||||| || || || || | || | | | | | |||| Sbjct 777956 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 777897 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||| || || | |||||||||||| ||| | || | |||| ||| Sbjct 777896 TGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 777837 Query 21651 CAAATACCTACAACA 21665 ||||| ||||| ||| Sbjct 777836 CAAATCCCTACTACA 777822 >seq292 Length=938337 Score = 84.2 bits (92), Expect = 6e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 21703 TATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATAT 21762 ||||||| |||||||||| |||||| | || ||||| || || ||||| | |||||| Sbjct 130074 TATTAAAACTAGCATATTAGAAGATTAATCGGCCAAAGTAACCATGAGCGACCACAATAA 130015 Query 21763 TGTAAGTCTCTTCCTCTTGACCAAAC 21788 | |||||||||||||||| ||| ||| Sbjct 130014 TATAAGTCTCTTCCTCTTAACCTAAC 129989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146200148813160