Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq4413 113 2e-20 seq2113 98.7 5e-16 >seq4413 Length=1061291 Score = 113 bits (124), Expect = 2e-20 Identities = 159/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||||||||| || |||||||||||||| || || | |||||| || |||||||| || Sbjct 4157 TACCTTTTCTCTTGCCTCCACCTTGATCAACATAACGTGCAGTATCGTTGAAAACACGCA 4098 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| ||||| | ||| | || ||| || || | |||| | || || | || Sbjct 4097 GCATGGGAACAATTCCGTTAGATGCTCCATTCGTTCCCCGAATATAACTCCCAGTAGCTC 4038 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 |||||| |||| ||| | ||| ||||| ||||| ||||| || || ||||| ||| Sbjct 4037 TAATATTGTGA-ATTGAGACACCAATTCCTCCAGCACATTTGCTTATGGCAGCACATTCT 3979 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||||| ||||||| | || |||||| ||||||| Sbjct 3978 GATAGAGTATCATAAATTCCCTCGATACTATCATCTTTCAT 3938 >seq2113 Length=1451509 Score = 98.7 bits (108), Expect = 5e-16 Identities = 167/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 26048 AAATAGATAGCAAAAC-TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGT 26106 |||| ||| || ||| |||||||||| || |||||||||||||| || |||| ||||| Sbjct 1176504 AAATTGATCACACAACCTACCTTTTCTCTTGCCTCCACCTTGATCAACATATCGGGCAGT 1176563 Query 26107 TTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAAT 26166 ||||||||||| || ||| ||||| | |||| | || ||| ||||| | |||| Sbjct 1176564 ATCATTGAAAACACGCAGCATAGGAACAATTCCATTGGAGGTTCCATTTGTTCCTCGAAT 1176623 Query 26167 CTTGGATCCTGTCGATCTAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTG 26225 | | || || | | |||| |||| | ||| | ||| || || ||||| |||| Sbjct 1176624 ATAGCTCCCAGTTGCACGGATATTGTGAAC-TGATACACCAATCCCTCCAGCAGATTTGC 1176682 Query 26226 AAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 ||| | ||||| || | ||||| | ||||| | ||||| ||| ||||||| Sbjct 1176683 TTATAACAGCACATTCCTTCAGAGTATCATATATTCCCTCGATGCTGTCATCTTTCAT 1176740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253026054491150