Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq4204 432 4e-116 seq3130 336 3e-87 seq3676 275 7e-69 seq4136 123 3e-23 seq4428 118 1e-21 seq2635 89.7 6e-13 seq692 89.7 6e-13 >seq4204 Length=279751 Score = 432 bits (478), Expect = 4e-116 Identities = 692/986 (70%), Gaps = 21/986 (2%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 215781 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 215840 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGC-ATCAACAACTGA 124167 || | ||| | | |||| |||| || | | || || || ||||| || || Sbjct 215841 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACC-TTGGCTATCAAGTACAGA 215899 Query 124168 TTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAA 124227 |||||| || ||||| || || | |||||| ||||| || | ||||| | || || || Sbjct 215900 TTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 215959 Query 124228 CCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAA 124287 ||| | | ||| ||||| || | || | ||||||||| | | | |||||||| || Sbjct 215960 CCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAA 216019 Query 124288 TGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGT 124347 |||||| |||||||| | || ||||||||||| || || || || || || || || Sbjct 216020 ACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATAAGT 216079 Query 124348 TTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCT 124407 ||||| ||||| || || | ||||| | || || || | || || ||||| || Sbjct 216080 CTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTCCCT 216139 Query 124408 GATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACAT 124467 ||| | | ||| || || | ||||||||||| || ||||| || || ||||| | Sbjct 216140 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 216199 Query 124468 TCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAAC 124527 || ||||| ||| |||||| || |||||||| || ||||| |||||||| ||||| || Sbjct 216200 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATAC 216259 Query 124528 GAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTG 124587 | |||||||||||||||||| || || || | ||||||||||||||||| || || Sbjct 216260 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 216319 Query 124588 ACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAAC 124647 ||||| || || | ||||| ||||| || || ||| |||| ||||| Sbjct 216320 ACCAATAGGATAAATCAAGAAAACAGC---------AG-TA-----GCTAAATATGCAAC 216364 Query 124648 ACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGC 124707 | |||||||||||||| || | | | | |||||||||| | ||||| || Sbjct 216365 AGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACA 216424 Query 124708 TGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCA 124767 | | ||||| | |||||| | || | | || |||||| || ||||| || ||||| Sbjct 216425 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTGTATAACCA 216484 Query 124768 TTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGA 124827 |||||||||| ||| |||||||| |||||||| ||||| | |||||| || || | Sbjct 216485 CTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGT 216544 Query 124828 TGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTC 124887 |||| || ||||||||||| || ||||| ||||| | ||||||| | || || || Sbjct 216545 AGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACTAGAAACAGGCTC 216604 Query 124888 TCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTG 124946 | || || || ||||| || |||| |||| || || || | || || ||| | | Sbjct 216605 ACGAATACCATCAATATCTACTAGAGGGGCTGTGATGAAGGCGATAATAAATACA-GAAG 216663 Query 124947 CTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGT 125006 ||| || | |||| || ||||| | |||||| ||||| || | |||| | ||| | Sbjct 216664 TTGCAGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTT-T 216722 Query 125007 TTGTTGAT-GTTACCCACTCACAGAA 125031 | | || | |||| ||| | ||||| Sbjct 216723 TCGGTGCTAGTTATCCAGTTGCAGAA 216748 >seq3130 Length=1765 Score = 336 bits (372), Expect = 3e-87 Identities = 484/679 (71%), Gaps = 4/679 (1%) Strand=Plus/Plus Query 124320 AACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGT 124379 |||| || || || || || || | || ||||| ||||| || || | ||||||| | Sbjct 654 AACCATGAGCGGCCACAATATT--AAGTCTCTTCCTCTTGACCAAATCTGTAACCATCAT 711 Query 124380 TCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCA 124439 | || || | || || ||||| ||||| | | ||| || || | |||||||| | Sbjct 712 TAGCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGTA 771 Query 124440 TTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCA 124499 | || ||||| || || ||||| | || ||||| ||| |||||| || ||||||| Sbjct 772 TAGCACTGAATAGGGAACCACCGAATACACCAGCTACACCTAACATGTGAAATGGATGCA 831 Query 124500 TTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAA 124559 | || ||||| |||||||| ||||| || | |||||||||||||||||| || || || | Sbjct 832 TAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTA 891 Query 124560 GTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATG 124619 ||||||||||||||||| || ||||||| || || | ||||| ||||| | Sbjct 892 AAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTAG 951 Query 124620 CAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATG 124679 |||| | || || |||||||| |||||| |||||||||||||| || | | | | Sbjct 952 CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAAC 1011 Query 124680 ATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCA 124739 |||||||||| | ||||| || | | ||||| | |||||| | || | | Sbjct 1012 TCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTA 1071 Query 124740 ACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGT 124799 || |||||| || ||||| || ||||| |||||||||| ||| |||||||| ||||||| Sbjct 1072 GCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGT 1131 Query 124800 AGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTAC 124859 | ||||| | |||||| || || | |||| || ||||||||||| || ||||| | Sbjct 1132 AAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTC 1191 Query 124860 CATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTG 124919 |||| | |||||||| | || || || | || || || ||||| || ||||| |||| Sbjct 1192 CATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTG 1251 Query 124920 CAATAAATGCAACGATGAA-ACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACA 124978 | || || || | || || ||| | | ||| || | |||| || ||||| | |||| Sbjct 1252 CGATGAAGGCGATAATAAATACA-GAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACA 1310 Query 124979 CCAAACCAACCAACATAAA 124997 || ||||| || | |||| Sbjct 1311 CCGAACCATCCGATGTAAA 1329 >seq3676 Length=461187 Score = 275 bits (304), Expect = 7e-69 Identities = 404/569 (71%), Gaps = 7/569 (1%) Strand=Plus/Minus Query 124430 GAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGG 124489 ||||||||||| || ||||| || || || |||| ||||| ||| |||| | Sbjct 288785 GAACCATGCATAGCACTGAATAGGGAACCGCCAAACA-----GCTACACCTAACATGCGA 288731 Query 124490 AAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCT 124549 || |||||||| || ||||| |||||| | ||||| || | |||||||||||||||||| Sbjct 288730 AATGGATGCATAAGGATGTTGTGCTCTACCTGGAATACAATCATAAAGTTGAAAGTACCA 288671 Query 124550 GAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAAT 124609 || || || | ||||||||||||||||| || ||||||| || || | ||||| Sbjct 288670 GATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAA 288611 Query 124610 ACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCT 124669 ||||| ||| | | || || |||||||| |||||| |||||||||||||| || Sbjct 288610 ACAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCC 288551 Query 124670 AATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGG 124729 | | | | |||||||||| | ||||| || | | ||||| | |||||| Sbjct 288550 AGACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGT 288491 Query 124730 AAAATTACCAACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCC 124789 | || | | || |||||| || ||||| || ||||| |||||||||| ||| |||||| Sbjct 288490 AGAACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCC 288431 Query 124790 CAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATG 124849 || |||||||| ||||| | |||||| || || | |||| || ||||||||||| Sbjct 288430 CAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATA 288371 Query 124850 ATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACA 124909 || ||||| ||||| | |||||| | || || || | || || || ||||| || Sbjct 288370 ATATTGTTTCCATAAAGTAAAGAATCGAAAACAGGCTCACGAATACCATCAATATCTACT 288311 Query 124910 GGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGCTGCTGTGAGTAAGCATGGAAT 124968 ||||| ||||| || || || | || || ||| | | ||| || | |||| || || Sbjct 288310 GGAGGGGCTGCGATGAAGGCGATAATAAATACA-GAAGTTGCAGTTAATAAGGTAGGGAT 288252 Query 124969 CATTAGAACACCAAACCAACCAACATAAA 124997 ||| | |||| | |||| || | |||| Sbjct 288251 CATCAAAACATCGGACCATCCGATGTAAA 288223 >seq4136 Length=310402 Score = 123 bits (136), Expect = 3e-23 Identities = 157/215 (73%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 124156 ATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACC 124215 |||||| || |||||||| || ||||| || || | |||||| ||||| || | ||||| Sbjct 3064 ATCAACTACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACC 3123 Query 124216 CATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCT 124275 | || || ||||| | | ||| ||||| || | || | ||||||||| | | | Sbjct 3124 TAAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACG 3183 Query 124276 TGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTAC 124335 |||||||| || |||||| |||||||| | || ||||||||||| || || || || Sbjct 3184 AGAGTTGTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCAC 3243 Query 124336 TATGTTGTATGTTTCTTCTTCTTGTCCGAA-CTTA 124369 || || || || ||||| ||||| || || |||| Sbjct 3244 AATATTATAAGTCTCTTCCTCTTGACCAAATCTTA 3278 >seq4428 Length=185154 Score = 118 bits (130), Expect = 1e-21 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 124394 TCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAA 124453 || || ||||| ||||| | | ||| || || | |||||||||| || ||||| Sbjct 19520 TCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCAAAGCACTGAATAGG 19579 Query 124454 GATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGC 124513 || || ||||| | || ||||| ||| |||||| || | |||||| || ||||| | | Sbjct 19580 GAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGAATGCATAAGGATGTTGTAC 19639 Query 124514 TCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCA 124573 ||||| ||||| || | |||||||||||||||||| || || | | |||||||||||| Sbjct 19640 TCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTTCTAAAGGCATACCATCA 19699 >seq2635 Length=570798 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | ||||||||| || || |||||||||||||| |||||||| || Sbjct 375446 ACACCAATAGGACCCATGCCAGGACCACCTCCACCATGTGGAATACAAAATGTCTTGTGA 375387 Query 138243 AAATTTAGATGACATACATCTGCACCA 138269 | || || || || |||||||| ||| Sbjct 375386 AGGTTAAGGTGGCAAACATCTGCTCCA 375360 >seq692 Length=852161 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 138158 TACAAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCC 138217 || |||||| | || || ||| |||||||||||||| | ||||||||| || || || Sbjct 267486 TAAAAATGGAGCCAGGTGCTTTTTAACACCAATAGGACCCATGCCAGGACCACCTCCACC 267427 Query 138218 ATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||| || |||||||| || | || || || || |||||||| ||| Sbjct 267426 ATGTGGAATGCAAAATGTCTTGTGAAGGTTAAGGTGGCAAACATCTGCTCCA 267375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578965672115440