Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq4204 536 2e-147 seq3130 417 1e-111 seq3676 336 3e-87 seq4136 181 1e-40 seq4428 123 3e-23 seq203 105 9e-18 seq4088 95.1 2e-14 seq4073 86.0 8e-12 seq81 84.2 3e-11 >seq4204 Length=279751 Score = 536 bits (594), Expect = 2e-147 Identities = 695/961 (72%), Gaps = 17/961 (2%) Strand=Plus/Plus Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789 |||||| || || | || || || || || || | |||||| || || || | ||||| Sbjct 215777 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 215836 Query 26790 ACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCAC 26849 | ||||||||||| | || |||||||| || | || ||||| || ||||| || Sbjct 215837 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAAGTAC 215896 Query 26850 AGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGT 26909 ||| || ||||| ||||| ||||| || ||||||||||| || | ||| | || || Sbjct 215897 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 215956 Query 26910 GAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTT 26969 |||||| || || || || ||||| ||||| | ||||||||| || ||||| |||||||| Sbjct 215957 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 216016 Query 26970 GAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTA 27029 || ||||||||||||||| || || || ||||| ||||| || || || || || || Sbjct 216017 AAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATA 216076 Query 27030 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTC 27089 |||||||| |||||||| || | ||||| | || || ||| ||||||| || || Sbjct 216077 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTC 216136 Query 27090 ACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAA 27149 | || | ||| || |||| || ||||||||| ||| || || || ||||| Sbjct 216137 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 216196 Query 27150 TACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAA 27209 ||| ||||| ||||| | |||||| || || ||||||||||| ||||| ||||||||||| Sbjct 216197 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAA 216256 Query 27210 TACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACC 27269 ||||| ||| |||| ||||||||||| || || | ||||||| |||| |||||| || Sbjct 216257 TACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCC 216316 Query 27270 TTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGC 27329 |||||| | |||||| | | ||| || ||| | ||| ||||||| Sbjct 216317 TTGACCAATAGGATAAATCAAGAAAACAGCA---------------GTAGCTAAATATGC 216361 Query 27330 TACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATA 27389 ||| ||||| ||||||||||| | ||| | |||||||||||||| |||||||| Sbjct 216362 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATA 216421 Query 27390 AGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAA 27449 | | | || | | |||||| | || | || | |||| || || || || || Sbjct 216422 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTGTATAA 216481 Query 27450 CCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGA 27509 ||||||||| | ||||| |||||||| |||||||| ||||| | ||||| || || Sbjct 216482 CCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGA 216541 Query 27510 ACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGG 27569 | | || | || |||||||| || || ||||| ||||| | | |||| || ||| || Sbjct 216542 AGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACTAGAAACAGG 216601 Query 27570 TTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGA 27628 ||||||||||| |||||||| || | || |||| |||||| |||| ||| || |||| Sbjct 216602 CTCACGAATACCATCAATATCTACTAGAGGGGCTGTGATGAAGGCGATAATAAATACAGA 216661 Query 27629 CAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGT 27688 |||||| | || | || |||||||||| ||||||||||| || | || | ||||| Sbjct 216662 -AGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGT 216720 Query 27689 T 27689 | Sbjct 216721 T 216721 >seq3130 Length=1765 Score = 417 bits (462), Expect = 1e-111 Identities = 505/684 (74%), Gaps = 4/684 (1%) Strand=Plus/Plus Query 27007 CCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTC 27066 ||||| || || || || || | |||||||| |||||||| || | ||||||| || Sbjct 656 CCATGAGCGGCCACAATATT--AAGTCTCTTCCTCTTGACCAAATCTGTAACCATCATTA 713 Query 27067 TGTGACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATA 27126 || ||| ||||||| || || | || | ||| || |||| || || ||| Sbjct 714 GCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGTATA 773 Query 27127 GCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATA 27186 ||| ||| || || ||||||||||| ||||| ||||| | |||||| || || |||||| Sbjct 774 GCACTGAATAGGGAACCACCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATA 833 Query 27187 AGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGA 27246 ||||| ||||| |||||||||||||||| ||| |||| ||||||||||| || || | | Sbjct 834 AGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAA 893 Query 27247 GGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCA 27306 |||||| |||| |||||| |||||||| | |||||| | | ||| || ||| | ||| Sbjct 894 GGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTAGCA 953 Query 27307 GCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAG 27366 || || || ||||| |||||||| ||| ||||| ||||||||||| | ||| | Sbjct 954 GCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTC 1013 Query 27367 AGTTCCCACTCACGTCCCATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGT 27426 |||||||||||||| ||||||||| | | || | | |||||| | || | || Sbjct 1014 AGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGC 1073 Query 27427 TGGAAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAG 27486 | |||| || || || || ||||||||||| | ||||| |||||||| |||||||| Sbjct 1074 TCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAA 1133 Query 27487 AAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCA 27546 ||||| | ||||| || ||| | || | || |||||||| || || ||||| ||| Sbjct 1134 AAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCA 1193 Query 27547 TACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCG 27606 || | | ||||||| ||| || ||||||||||| |||||||| || || || |||||| Sbjct 1194 TAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTGCG 1253 Query 27607 ATGAATGCGACAATGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACC 27665 ||||| |||| ||| || |||| |||||| | || | || |||||||||| ||||| Sbjct 1254 ATGAAGGCGATAATAAATACAGA-AGTTGCAGTCAATAAGGTAGGGATCATCAAAACACC 1312 Query 27666 GAACCAACCAACATACAAACGGTT 27689 |||||| || | || | |||||| Sbjct 1313 GAACCATCCGATGTAAAGACGGTT 1336 >seq3676 Length=461187 Score = 336 bits (372), Expect = 3e-87 Identities = 420/573 (73%), Gaps = 7/573 (1%) Strand=Plus/Minus Query 27118 CCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 27177 || ||||||||| ||| || || || || || |||| ||||| | |||| | || Sbjct 288782 CCATGCATAGCACTGAATAGGGAACCGCCAAA-----CAGCTACACCTAACATGCGAAAT 288728 Query 27178 GGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAG 27237 || ||||||||||| ||||| ||| |||||||||||| ||| |||| ||||||||||| Sbjct 288727 GGATGCATAAGGATGTTGTGCTCTACCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 288668 Query 27238 ATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACT 27297 || || | ||||||| |||| |||||| |||||||| | |||||| | | ||| || Sbjct 288667 ATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACA 288608 Query 27298 GCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAA 27357 ||| | ||| | || || ||||| |||||||| ||| ||||| ||||||||||| | | Sbjct 288607 GCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGA 288548 Query 27358 CGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGATGCCGATAAGGAAGTGGAAG 27417 || | |||||||||||||| ||||||||| | | || | | |||||| | Sbjct 288547 CGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGA 288488 Query 27418 ACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAG 27477 || | || | |||| || || || || ||||||||||| | ||||| |||||||| Sbjct 288487 ACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAA 288428 Query 27478 ATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATG 27537 |||||||| ||||| | ||||| || ||| | || | || |||||||| || || Sbjct 288427 ATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATA 288368 Query 27538 TTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGT 27597 ||||| ||||| | | ||| | ||| || ||||||||||| |||||||| || || Sbjct 288367 TTGTTTCCATAAAGTAAAGAATCGAAAACAGGCTCACGAATACCATCAATATCTACTGGA 288308 Query 27598 GGTGCTGCGATGAATGCGACAATGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATCAT 27656 || ||||||||||| |||| ||| || |||| |||||| | ||| | || |||||||| Sbjct 288307 GGGGCTGCGATGAAGGCGATAATAAATACAGA-AGTTGCAGTTAATAAGGTAGGGATCAT 288249 Query 27657 CAGTACACCGAACCAACCAACATACAAACGGTT 27689 || ||| || |||| || | || | |||||| Sbjct 288248 CAAAACATCGGACCATCCGATGTAAAGACGGTT 288216 >seq4136 Length=310402 Score = 181 bits (200), Expect = 1e-40 Identities = 189/247 (77%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 26809 TCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTGAAA 26868 || |||||||| || | || ||||| || ||||| ||||| || ||||| ||||| Sbjct 3032 TCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTGAAT 3091 Query 26869 CCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACAACG 26928 ||||| || ||||||||||| || | ||| | || |||||||| || || || || Sbjct 3092 CCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACA 3151 Query 26929 GGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAG 26988 ||||| ||||| | ||||||||| || ||||| |||||||| || ||||||||||||| Sbjct 3152 GGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAG 3211 Query 26989 ATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCG 27048 || || || || ||||| ||||| || || || || || || |||||||| |||||||| Sbjct 3212 ATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATAAGTCTCTTCCTCTTGACCA 3271 Query 27049 AA-CTTA 27054 || |||| Sbjct 3272 AATCTTA 3278 >seq4428 Length=185154 Score = 123 bits (136), Expect = 3e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27070 GACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCA 27129 || ||| ||||||| || || | || | ||| || |||| || |||| |||| Sbjct 19511 GATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCAAAGCA 19570 Query 27130 GAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGG 27189 ||| || || || |||||||| ||||| ||||| | |||||| || | ||||||||| Sbjct 19571 CTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGAATGCATAAGG 19630 Query 27190 ATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGC 27249 || |||| |||||||||||||||| ||| |||| ||||||||||| || | | |||| Sbjct 19631 ATGTTGTACTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTTCTAAAGGC 19690 Query 27250 ATAGCATC 27257 ||| |||| Sbjct 19691 ATACCATC 19698 >seq203 Length=971741 Score = 105 bits (116), Expect = 9e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789 |||||| || || | || || || || || || | |||||| || || || | ||||| Sbjct 778020 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 777961 Query 26790 ACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCAC 26849 | ||||||||||| | || |||||||| || | || ||||| || ||||| || Sbjct 777960 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 777901 Query 26850 AGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGT 26909 ||| || ||||| ||||| ||||| || ||||||||||| || | ||| | || || Sbjct 777900 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 777841 Query 26910 GAACCAGATGCCAACAAC 26927 |||||| || || || || Sbjct 777840 GAACCAAATCCCTACTAC 777823 >seq4088 Length=340663 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 23870 CGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAA 23929 |||||| |||||||| || |||| |||||||| ||| | || || || || || || || Sbjct 183846 CGTCCAATTATGAAATCCTTGGAAGAAGAGAATGAATCGAAATATTGCTGCTACGCCAAA 183905 Query 23930 ACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATA 23979 ||||||||||||||||||| || |||||||| ||||| || | |||| Sbjct 183906 ACTCGGCGCAAAGAACCAACCAGATTGTCCCAATGGATAAATCAAAAATA 183955 >seq4073 Length=331218 Score = 86.0 bits (94), Expect = 8e-12 Identities = 148/213 (69%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 23925 CCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGAC 23984 || |||||||||||||| |||||| || || | ||| ||||| || |||||||| || Sbjct 28535 CCAAAACTCGGCGCAAATAACCAACCAGATTGCCTCAATGGATAAATCAGGAATACGGAA 28476 Query 23985 ACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA 24044 || || | ||| || |||||| || | ||| |||| || | || | | || || Sbjct 28475 ACAAAAATAGCGATTATACCAGAGAATGAAATTACATTATAAGACCGCAATTGAA-CGGA 28417 Query 24045 C-GTGCCAGTTCAAACTG------ACGTAACATAAAACCTATAAGTGCAAAGGCACCGTG 24097 | | || |||||||| || || |||| |||||||| || ||||| | || || Sbjct 28416 CTGAGCAAGTTCAAATTGGTGTGAGTGTGACATTAAACCTATTAGAGCAAAAACCCCATG 28357 Query 24098 GAGAGCAACAAAGGACCAAAGCCCTCCAAGTTG 24130 | ||||||||| | ||| || || || | ||| Sbjct 28356 AAAAGCAACAAAAGTCCACAGACCGCCTAATTG 28324 >seq81 Length=1043357 Score = 84.2 bits (92), Expect = 3e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 24002 ACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGAC-GTGCCAGTTCAAACT 24060 |||||| || | ||| ||||| || | || | | || |||| | || |||||||| | Sbjct 506780 ACCAGATAATGAAATTGCATTATAAAGCCGCAATTGAAC-AGACCGAGCAAGTTCAAATT 506838 Query 24061 GACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCA 24115 |||||||||| |||||||| |||||||| || || || ||||||||||| | ||| Sbjct 506839 GACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGAAGAGCAACAAAAGCCCA 506893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665456782929040