Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4 123 3e-23 seq603 114 2e-20 seq4423 96.9 4e-15 seq4414 96.9 4e-15 seq447 95.1 1e-14 seq4413 86.0 7e-12 seq3829 82.4 9e-11 >seq4 Length=1057841 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| |||| || || || || ||||| ||||||||||| || || || Sbjct 125534 CTTCGCCGAGCGCCTCGTTGCTTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 125475 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | |||| | |||||||| || |||||||| || || |||||| || || Sbjct 125474 CTGCGCCATCTTTTGGCTTAAGAAGCGCGGCCTCATGCCGGGTCTTACCTTCTCCAACGA 125415 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 125414 GCTCATCTCCCGCGACGAGGGCCTGCAC 125387 >seq603 Length=994148 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| ||||| ||||| || || || Sbjct 841936 CTTCGCCGAGCGCCTAGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCGGGATCCTT 841877 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 841876 CTGCGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 841817 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 841816 GCTCATCTCCCGCGACGAGGGCCTGCAC 841789 >seq4423 Length=186807 Score = 96.9 bits (106), Expect = 4e-15 Identities = 190/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| ||||| |||||| ||||||| ||||| || | | ||| Sbjct 100208 TTTGTGGAGATGTTTGTGGGTGTTGGTGCCTCCCGGGTTCGTGATCTTTTCAAGAAGGCC 100267 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 100268 AAGGAGAATGCTCCTTGCATAGTATTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGG 100327 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || || || || | || || | || || Sbjct 100328 GGGACAGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACTTTGAACCAGTTGCTGACT 100387 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | ||||| || | ||| |||| ||||| || | | Sbjct 100388 GAGATGGATGGTTTTGAGGGGAACACTGGAATAATTGTTGTTGCTGCCACCAACAGGGCT 100447 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 |||||| | ||| || | ||| | || || |||||||| Sbjct 100448 GATATCTTGGATTCAGCTTTACTTAGGCCTGGACGTTTTGA 100488 >seq4414 Length=189502 Score = 96.9 bits (106), Expect = 4e-15 Identities = 190/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| ||||| |||||| ||||||| ||||| || | | ||| Sbjct 71446 TTTGTGGAGATGTTTGTGGGTGTTGGTGCCTCCCGGGTTCGTGATCTTTTCAAGAAGGCC 71505 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 71506 AAGGAGAATGCTCCTTGCATAGTATTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGG 71565 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || || || || | || || | || || Sbjct 71566 GGGACAGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACTTTGAACCAGTTGCTGACT 71625 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | ||||| || | |||||||| ||||| || | | Sbjct 71626 GAGATGGATGGTTTTGAGGGGAACACTGGAATAATTGTTATTGCTGCCACCAACAGGGCT 71685 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 || ||| | ||| || | ||| | || || |||||||| Sbjct 71686 GACATCTTGGATTCAGCTTTACTTAGACCTGGACGTTTTGA 71726 >seq447 Length=1725674 Score = 95.1 bits (104), Expect = 1e-14 Identities = 213/318 (67%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| || ||| || | || ||| || || || |||||||| Sbjct 1584338 GGGGCCAAGATCCCCAAGGGATGCCTGCTGGTTGGCCCGCCCGGAACTGGCAAGACCCTG 1584279 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| |||| || || | || || ||| || ||| | ||| | | Sbjct 1584278 CTGGCGCGTGCCGTCGCTGGGGAGGCCGGCGTGCCCTTCTTCTCCTGCGCCGCCTCCGAG 1584219 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| |||| || |||||||| || ||||| | ||||| || || | ||| Sbjct 1584218 TTCGTCGAGCTGTTCGTCGGTGTGGGCGCGTCCAGGGTCAGGGATCTGTTCGAGAAGGCC 1584159 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || ||||| ||||||||||| |||||||| || || | ||| || Sbjct 1584158 AAGGCCAAGGCGCCGTGCATTGTGTTCATTGATGAAATTGATGCCGTCGGGAGGCAGCGT 1584099 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | || || | | | | | |||||| ||||| || || || || || || || | | Sbjct 1584098 GGTGCAGGACTCGGAGG--GGGAAATGATGAGAGGGAGCAGACCATCAACCAGCTCTTGA 1584041 Query 175574 CCGAGATGGATGGCTTTG 175591 | ||||||||||| |||| Sbjct 1584040 CGGAGATGGATGGATTTG 1584023 >seq4413 Length=1061291 Score = 86.0 bits (94), Expect = 7e-12 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCT--TCAACGGCTCGATGGCATCCTC 75202 || |||||| | || |||||||||| || || |||| | || | | | ||| | | Sbjct 3633 TATTTTGGTTTTAAGACCCTTGAGA-GATCTTATCTGTTGAAAG--TTGGTGGAAAGGTT 3689 Query 75203 ATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATT 75262 |||||| |||||| | ||| | ||| | || | || || || ||| ||| || ||| Sbjct 3690 GTGGAAAGACCACAGCATATGCTAATGAGAGTTTCCATTGGGATTCACAAGGATGATATT 3749 Query 75263 GATTCTGTCTTGGAGA-CATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACC 75321 || |||| || ||| ||||| ||| |||||| || | ||| | ||| ||| |||| Sbjct 3750 GAGTCTG-CTATCAGAACATACCACATGATGTCTCAGCGCTGGTTTACTCATGCATCACC 3808 Query 75322 AACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 |||||| ||||||||||| || ||||| || || Sbjct 3809 AACCCTTTTCAATGCTGGCACTCCAAGGCCTCA 3841 >seq3829 Length=445942 Score = 82.4 bits (90), Expect = 9e-11 Identities = 210/318 (66%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| || ||| || | || || || || || |||||||| Sbjct 322595 GGGGCCAAGATCCCCAAGGGATGCCTGCTGGTTGGCCCTCCCGGAACTGGCAAGACCCTG 322536 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| |||| || || | || || ||| || ||| | || | | Sbjct 322535 CTGGCGCGTGCCGTCGCTGGGGAGGCCGGCGTACCGTTCTTCTCCTGCGCCGCGTCGGAG 322476 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| |||| || |||||||| || ||||| | || || || || | ||| Sbjct 322475 TTCGTCGAGCTGTTCGTCGGTGTGGGCGCGTCCAGGGTCAGGGACCTGTTCGAGAAGGCC 322416 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || || || ||||||||||| |||||||| || || | ||| || Sbjct 322415 AAGGCCAAGGCGCCGTGCATCGTGTTCATTGATGAAATTGATGCCGTCGGGAGGCAGCGT 322356 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 |||| || | | | | | |||||| ||||| || || || ||||| || || | | Sbjct 322355 GGCGCAGGGCTCGGAGG--GGGAAATGATGAGAGGGAGCAGACCATTAACCAGCTCTTGA 322298 Query 175574 CCGAGATGGATGGCTTTG 175591 | |||||||| || |||| Sbjct 322297 CGGAGATGGACGGATTTG 322280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596535878903360