Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq4204 520 1e-142 seq3130 399 3e-106 seq3676 293 3e-74 seq4136 172 7e-38 seq203 116 5e-21 seq1536 93.3 5e-14 >seq4204 Length=279751 Score = 520 bits (576), Expect = 1e-142 Identities = 704/983 (72%), Gaps = 15/983 (2%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 215781 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 215840 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | ||| | ||||| || ||| Sbjct 215841 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAAGTACAGAT 215900 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || |||||||| ||||| || ||||| || | |||||| | || ||| ||| Sbjct 215901 TGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 215960 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130 |||| | ||| || || | | ||| | ||||||||| | | | | ||||||||| Sbjct 215961 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 216020 Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190 ||||| ||||||||||||| |||||||| |||||||| || ||||||||||| ||| Sbjct 216021 CTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATAAGTC 216080 Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTG 8250 ||||| ||||||||||| | ||||| | || ||| || | |||||| || || ||| Sbjct 216081 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTCCCTG 216140 Query 8251 ATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATA 8310 || | | ||| || || || ||||| |||||||||||||| || || || ||||| | | Sbjct 216141 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 216200 Query 8311 CCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACG 8370 || ||||| ||| ||| || || ||||||||||| ||||| |||||||| |||||||| Sbjct 216201 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACA 216260 Query 8371 AACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGA 8430 | ||| ||||| || |||||||| || |||| |||||| ||||||||||| || ||| Sbjct 216261 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 216320 Query 8431 CCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACA 8490 |||| ||||| | ||||| || ||||| || || |||||| ||| Sbjct 216321 CCAATAGGATAAATCAAGAAAAC------AGCAGTAGCTA---------AATATGCAACA 216365 Query 8491 CAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCA 8550 ||||| || | |||||| | ||| | | ||||||| | |||||| ||| | Sbjct 216366 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAA 216425 Query 8551 GAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCAC 8610 | | |||| | |||||| | | || | || ||| || || || || || |||||| Sbjct 216426 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTGTATAACCAC 216485 Query 8611 TCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGAT 8670 ||||| | | |||||||||||||| || || ||||| ||||| || || |||| Sbjct 216486 TCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTA 216545 Query 8671 GGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCA 8730 |||| | ||||||||||| || ||||||||||| | || |||| | |||||| ||| Sbjct 216546 GGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACTAGAAACAGGCTCA 216605 Query 8731 CGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCA 8790 |||||||| || ||||| || | || || | || || || | ||||| || || Sbjct 216606 CGAATACCATCAATATCTACTAGAGGGGCTGTGATGAAGGCGATAATAAATACAGAAGTT 216665 Query 8791 GCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTT 8850 |||| || ||| ||| ||||| | ||| || ||||| |||| ||||| | ||| | Sbjct 216666 GCAGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCG 216725 Query 8851 GTACTTGTAACCCACTCGCAAAA 8873 || || || | ||| | ||| || Sbjct 216726 GTGCTAGTTATCCAGTTGCAGAA 216748 >seq3130 Length=1765 Score = 399 bits (442), Expect = 3e-106 Identities = 499/683 (73%), Gaps = 2/683 (0%) Strand=Plus/Plus Query 8164 CCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTC 8223 |||||||| || ||||||||| |||||||| ||||||||||| | ||||||| || Sbjct 656 CCATGAGCGGCCACAATATTAA--GTCTCTTCCTCTTGACCAAATCTGTAACCATCATTA 713 Query 8224 TGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATA 8283 ||| || | |||||| || || ||||| | | ||| || || || ||||| || ||| Sbjct 714 GCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGTATA 773 Query 8284 GCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATA 8343 |||||||| || || |||||||| | ||| ||||| ||| ||| || || ||||||||| Sbjct 774 GCACTGAATAGGGAACCACCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATA 833 Query 8344 AGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGA 8403 || ||||| |||||||| |||||||| | ||| ||||| || |||||||| || |||| | Sbjct 834 AGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAA 893 Query 8404 GGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCA 8463 ||||| ||||||||||| || ||||||| ||||| | ||||| || || |||| Sbjct 894 GGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTAGCA 953 Query 8464 GCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGAT 8523 || | || ||||| |||||| ||| ||||| || | |||||| | ||| | Sbjct 954 GCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTC 1013 Query 8524 AACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAAC 8583 | ||||||| | |||||| ||| || | |||| | |||||| | | || | | Sbjct 1014 AGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGC 1073 Query 8584 TGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAG 8643 | ||| || || || || || ||||||||||| | | |||||||||||||| || || Sbjct 1074 TCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAA 1133 Query 8644 AAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCA 8703 ||||| ||||| || || |||| |||| | ||||||||||| || ||||||||| Sbjct 1134 AAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCA 1193 Query 8704 TACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCA 8763 || | || ||||| | |||||| ||||||||||| || ||||| || || || || || Sbjct 1194 TAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTGCG 1253 Query 8764 ATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCA 8823 || || || | ||||| || || |||| || ||| ||| ||||| | ||| || Sbjct 1254 ATGAAGGCGATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCG 1313 Query 8824 AACCAACCGACATAAAGTCTGTT 8846 ||||| |||| ||||| | ||| Sbjct 1314 AACCATCCGATGTAAAGACGGTT 1336 >seq3676 Length=461187 Score = 293 bits (324), Expect = 3e-74 Identities = 410/575 (71%), Gaps = 5/575 (1%) Strand=Plus/Minus Query 8272 GAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGG 8331 ||||| |||||||||||||| || || || || |||| ||||| ||| ||| | Sbjct 288785 GAACCATGCATAGCACTGAATAGGGAACCGCCAAACA-----GCTACACCTAACATGCGA 288731 Query 8332 AAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCA 8391 || ||||||||||| ||||| |||||| | |||||||| | ||| ||||| || |||||| Sbjct 288730 AATGGATGCATAAGGATGTTGTGCTCTACCTGGAATACAATCATAAAGTTGAAAGTACCA 288671 Query 8392 GAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAAC 8451 || || |||| |||||| ||||||||||| || ||||||| ||||| | ||||| Sbjct 288670 GATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAA 288611 Query 8452 ACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCT 8511 || || |||| | | || ||||| |||||| ||| ||||| || | |||||| Sbjct 288610 ACAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCC 288551 Query 8512 AAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGG 8571 | ||| | | ||||||| | |||||| ||| || | |||| | |||||| Sbjct 288550 AGACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGT 288491 Query 8572 AAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCC 8631 | | || | || ||| || || || || || ||||||||||| | | ||||||||| Sbjct 288490 AGAACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCC 288431 Query 8632 CAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATG 8691 ||||| || || ||||| ||||| || || |||| |||| | ||||||||||| Sbjct 288430 CAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATA 288371 Query 8692 ATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACA 8751 || ||||||||||| | || ||| | |||||| ||||||||||| || ||||| || Sbjct 288370 ATATTGTTTCCATAAAGTAAAGAATCGAAAACAGGCTCACGAATACCATCAATATCTACT 288311 Query 8752 GGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATC 8811 || || || || || || || | ||||| || || |||| ||| ||| ||| ||| Sbjct 288310 GGAGGGGCTGCGATGAAGGCGATAATAAATACAGAAGTTGCAGTTAATAAGGTAGGGATC 288251 Query 8812 ATTAGAACTCCAAACCAACCGACATAAAGTCTGTT 8846 || | ||| | |||| |||| ||||| | ||| Sbjct 288250 ATCAAAACATCGGACCATCCGATGTAAAGACGGTT 288216 >seq4136 Length=310402 Score = 172 bits (190), Expect = 7e-38 Identities = 168/215 (78%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 7998 ATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACC 8057 |||||| || |||||||| || || |||||||| ||||| || ||||| || | |||||| Sbjct 3064 ATCAACTACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACC 3123 Query 8058 CATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCT 8117 | || ||| ||||||| | ||| || || | | ||| | ||||||||| | | | Sbjct 3124 TAAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACG 3183 Query 8118 ACTGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAAC 8177 | ||||||||| ||||| ||||||||||||| |||||||| |||||||| || || Sbjct 3184 AGAGTTGTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCAC 3243 Query 8178 AATATTATAGGTCTCTTCTTCTTGACCAAA-CTTA 8211 ||||||||| |||||||| ||||||||||| |||| Sbjct 3244 AATATTATAAGTCTCTTCCTCTTGACCAAATCTTA 3278 >seq203 Length=971741 Score = 116 bits (128), Expect = 5e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 778016 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 777957 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | ||| | |||||| || ||| Sbjct 777956 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 777897 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || |||||||| ||||| || ||||| || | |||||| | || ||| ||| Sbjct 777896 TGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 777837 Query 8071 CAAA 8074 |||| Sbjct 777836 CAAA 777833 >seq1536 Length=687949 Score = 93.3 bits (102), Expect = 5e-14 Identities = 164/232 (71%), Gaps = 19/232 (8%) Strand=Plus/Plus Query 8136 ATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTC 8195 ||| | ||||||||||| |||||||| ||||||| | ||||||||||| |||||||| Sbjct 571044 ATATTAGAAGATTAATCGGCCAAAGTAACCATGAGTGACCACAATATTATAAGTCTCTTC 571103 Query 8196 TTCTTGACCAAACTTATAA----CCATAGTTCTGAGACTCTTC-TTC-AGTTGTCTCTCT 8249 ||||| | |||| || ||| | |||| | || ||| ||| ||| || | ||| Sbjct 571104 TTCTT-ATCAAATTTGTAACTCTCGTTAGTCGTTAGTAGATTCATTCTAGTGGT-TTTCT 571161 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACAT 8309 ||| | | ||| || || ||||| |||||||||| || || | | | || | Sbjct 571162 GATCAAACTAGAGGTTACCAAAGA-------ATAGCACTGAGCAGGGAACAATCCAATAC 571214 Query 8310 ACCTGCTACCCCTGCCATATGGAAA--GGATGCATAAGAATGTTATGCTCTG 8359 ||| ||||| || ||||| ||| |||||||||| |||| | ||| ||| Sbjct 571215 ACCCGCTACATCT--AATATGTAAAATGGATGCATAAAAATGCTGTGCGCTG 571264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615827588377840