Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq4204 533 2e-146 seq3130 370 1e-97 seq3676 284 1e-71 seq4136 172 6e-38 seq203 134 2e-26 seq2035 102 9e-17 seq1181 84.2 2e-11 >seq4204 Length=279751 Score = 533 bits (590), Expect = 2e-146 Identities = 711/989 (72%), Gaps = 17/989 (2%) Strand=Plus/Minus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 ||||||| | ||| | || ||||| | |||||||| || |||| ||||| ||| | Sbjct 216749 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 216690 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 |||||| || || | ||| | |||||| |||| || || ||||||||||| | || | Sbjct 216689 GATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCC 216631 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | | || || || || || || ||||| || || || ||||| | | ||||| |||| Sbjct 216630 CTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACA 216571 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 | || ||||||||||| || |||| |||| || || || | ||||| || || | Sbjct 216570 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 216511 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 | |||||||| ||||| |||| || ||| | || || || || |||| | || ||| Sbjct 216510 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 216451 Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | | |||||| | |||| | | || ||||||||||||||||||||| || || Sbjct 216450 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 216391 Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186 |||| ||||||||||| ||||| |||||| || | ||| | || Sbjct 216390 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTAC---------------TG 216346 Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 166246 | || ||| | | |||||| | |||||||| ||||||||||||| ||||| | |||| Sbjct 216345 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 216286 Query 166247 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 166306 | || || || ||||||| ||| | || ||||| || |||||||| || || ||||||| Sbjct 216285 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATC 216226 Query 166307 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 166366 | || || ||| | || || ||||| ||||| || || | || ||||||||||| | Sbjct 216225 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 216166 Query 166367 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 166426 | ||||| || ||| | | | || || || ||||||| ||||| || | | Sbjct 216165 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGG 216106 Query 166427 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 166486 |||||| || || ||||| ||||| || || || || || ||||||||||||||||| | Sbjct 216105 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTG 216046 Query 166487 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 166546 | || || ||||||||||| ||| || |||||||| || || || ||||||||| | | Sbjct 216045 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 215986 Query 166547 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 166606 |||| |||||||| || || || |||||||| || | || | || ||||| |||| Sbjct 215985 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 215926 Query 166607 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 166666 |||| ||||| ||||| |||||||| || | |||||| | || ||||| || | || | Sbjct 215925 ACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATA 215866 Query 166667 CCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACG 166726 | ||||| ||| | | ||||| ||| ||| ||||||||||| ||||| || ||||| | Sbjct 215865 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 215806 Query 166727 CACACAACTTCCCCCTCGACCTCGCTGCT 166755 | ||||||||||| || ||||| |||||| Sbjct 215805 CTCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 370 bits (410), Expect = 1e-97 Identities = 503/698 (72%), Gaps = 4/698 (1%) Strand=Plus/Minus Query 165784 ACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTGATGATTCCAACTCTG 165843 || ||||| | |||||||| || |||| ||||| ||| ||||||| || || | Sbjct 1348 ACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTA 1289 Query 165844 TTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGA 165902 ||| | |||||| |||| || || ||||||||||||| || || || || || || || Sbjct 1288 TTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGA 1230 Query 165903 CGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGC 165962 || || ||||| || || |||||||| | | ||||| ||||| || ||||||||||| Sbjct 1229 TGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGC 1170 Query 165963 AGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATC 166022 || |||| |||| || || || | ||||| || || || |||||||| ||||| Sbjct 1169 CATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATC 1110 Query 166023 GCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTGAT 166082 |||| || ||| | || || || || |||| | || |||| | |||||| | | Sbjct 1109 TGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACT 1050 Query 166083 TGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCC 166142 ||| | | || ||||||||||||||||||||| || |||||| ||||||||||| Sbjct 1049 TGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCC 990 Query 166143 ATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATA 166202 ||||| |||||| || ||||| || || || ||||| | ||| || ||| | | || Sbjct 989 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 930 Query 166203 TCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAA 166262 |||| | |||||||| ||||||||||||| ||||| | ||||| || || || ||||| Sbjct 929 TCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAA 870 Query 166263 CTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGG 166322 || ||| | || ||||| || |||||||| || || |||||||| || || ||| | || Sbjct 869 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 810 Query 166323 CGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTC 166382 || ||||| ||||| ||||| | || |||||||| || || ||||| || || Sbjct 809 TGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTC 750 Query 166383 TTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACA 166442 | | | | || || || ||||||| ||||| || | ||||||| || || || Sbjct 749 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCA 690 Query 166443 AGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTT 166480 ||| ||||| || | || || || ||||||||||||| Sbjct 689 AGAGGAAGAGACTT--AATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 284 bits (314), Expect = 1e-71 Identities = 425/601 (71%), Gaps = 7/601 (1%) Strand=Plus/Plus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 ||||||| | ||| | | ||||| | |||||||| || |||| |||| | | | Sbjct 288188 CTTCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTT 288247 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 |||||| || || | || | |||||| |||| || || ||||||||||||| || | Sbjct 288248 GATGATCCCTACCTTATTAACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCC 288306 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | || || || || || || || ||||| || || | |||| | | ||||| |||| Sbjct 288307 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACA 288366 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 | || ||||||||||| || |||| |||| || || || | ||||| || || | Sbjct 288367 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 288426 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 | |||||||| ||||| |||| || ||| | || || || || |||| | || ||| Sbjct 288427 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 288486 Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | | |||||| | |||| | | || ||||||||||||||||||||| || || Sbjct 288487 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 288546 Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186 |||| ||||||||||| ||||| |||||| || ||||| || || || | ||| | || Sbjct 288547 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTG 288606 Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 166246 | || ||| | | |||||| | |||||||| ||||||||||||| ||||| | |||| Sbjct 288607 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 288666 Query 166247 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 166306 | || || || ||||||| ||| | || ||||| | |||||||| || || ||||||| Sbjct 288667 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATC 288726 Query 166307 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 166366 | || | ||| | || || |||| ||||| || | || ||||||||||| | Sbjct 288727 CATTTCGCATGTTAGGTGTAGCTG-----TTTGGCGGTTCCCTATTCAGTGCTATGCATG 288781 Query 166367 G 166367 | Sbjct 288782 G 288782 >seq4136 Length=310402 Score = 172 bits (190), Expect = 6e-38 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 166435 TTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTG 166494 || || ||||| ||||| || || || || || ||||||||||||||||| || || || Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 166495 ATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGG 166554 ||||||||||| ||| || |||||||| || || || ||||||||| | ||||| ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 166555 CCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAAC 166614 ||||| || || || |||||||| || | || | || ||||| |||||||| ||| Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 166615 GGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCA 166674 || ||||| |||||||| || | ||||| | || ||||| || | || || ||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 166675 GAT 166677 ||| Sbjct 3033 GAT 3031 >seq203 Length=971741 Score = 134 bits (148), Expect = 2e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 166557 TGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGG 166616 ||| || || || |||||||| || | || | || ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 166617 TTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGA 166676 ||||| |||||||| || | ||||| | || ||||| || | || || ||||| || Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 166677 TGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTT 166736 | | | ||||| ||| ||| ||||||||||| ||||| || ||||| || |||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 166737 CCCCCTCGACCTCGCTGCT 166755 ||| || ||||| |||||| Sbjct 778002 CCCTCTAGACCTAGCTGCT 778020 >seq2035 Length=9416 Score = 102 bits (112), Expect = 9e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 167743 GGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATG 167802 ||||| |||| ||| ||||| ||| | ||||||||||| |||| || ||||| | Sbjct 3852 GGCATAACTTTTTTCAATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACC 3793 Query 167803 GGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGAT 167862 || | |||| | |||||| | | || || ||||| || || ||||| || || Sbjct 3792 GGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGAC 3733 Query 167863 TTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAAA 167922 || ||||| | || ||| | || ||||| ||||| || ||||| |||||||| || ||| Sbjct 3732 TTTGTTTCCTAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 3673 Query 167923 AACATCCTTCTGAATGAAGGT 167943 || || || | ||||| ||| Sbjct 3672 AATATTGTTTTAAATGAGGGT 3652 >seq1181 Length=731501 Score = 84.2 bits (92), Expect = 2e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 18120 TCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAG 18179 ||| ||| |||||| ||||||||| || ||||| ||| ||||||| || ||||||||| Sbjct 30337 TCCATTC-TTCCTCGGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAG 30279 Query 18180 GTTCAAATCCTACCTGGGGAG 18200 |||| |||||||| ||||||| Sbjct 30278 GTTCGAATCCTACTTGGGGAG 30258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561216275456800