Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq4204 459 8e-125 seq3130 356 7e-94 seq3676 255 2e-63 seq4136 174 5e-39 seq203 104 7e-18 seq292 84.2 6e-12 >seq4204 Length=279751 Score = 459 bits (508), Expect = 8e-125 Identities = 677/959 (71%), Gaps = 21/959 (2%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACA 41320 ||||||||||| | ||||||||||| || | ||||| || | ||| ||| | | || Sbjct 216721 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGAC--TGCA 216665 Query 41321 ACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGA 41377 |||| | |||||||||||||| | || || | || || || ||||| || || Sbjct 216664 ACTTCTGTATTTATTATCGCCTTCATCACAGCCCCTCTAGTAGATATTGATGGTATTCGT 216605 Query 41378 GAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCG 41437 || || || || | || | | ||||| ||||| || || || || ||| | |||| Sbjct 216604 GAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCT 216545 Query 41438 AGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAA 41497 | | || |||||| | ||||| |||||||||||||||||||| | ||||||| Sbjct 216544 ACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAG 216485 Query 41498 TGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTT 41557 ||| | ||||| ||||| || | | || | || | |||||| | |||| || | Sbjct 216484 TGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 216425 Query 41558 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTT 41617 ||| ||||| || ||||||||||| || | || || || ||| | || ||||| | Sbjct 216424 TGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 216365 Query 41618 GTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGA 41677 ||||| || | ||| |||||||| ||| | ||||||| |||| Sbjct 216364 GTTGCATATTTAGCT---------------ACTGCTGTTTTCTTGATTTATCCTATTGGT 216320 Query 41678 CAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTG 41737 || || ||| ||||||| |||||| || || ||||| || || ||||||| ||| | Sbjct 216319 CAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATT 216260 Query 41738 GTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGC 41797 || |||||||| |||||||| || ||||||||||| ||||||||| | ||||| || || Sbjct 216259 GTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGT 216200 Query 41798 GTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATT 41857 ||||| || || | ||| ||||||||| ||| | |||| || || | || Sbjct 216199 GTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATC 216140 Query 41858 CGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAG 41917 | || || |||||| | | || || | ||||||| |||||||||||||||||| Sbjct 216139 AGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAG 216080 Query 41918 ACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGC 41977 ||||| |||||||| || ||||| || || ||||| || | ||||||||||||||||| Sbjct 216079 ACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTAATCTTCCAATATGCTAGT 216020 Query 41978 TTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGG 42037 ||||| || || ||| | | || ||||| | ||||| |||||||| ||||| |||||| Sbjct 216019 TTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGG 215960 Query 42038 TTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAA 42097 || |||| | || | ||| |||||||||||| | || || ||||| || |||||| Sbjct 215959 TTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTCAACCAA 215900 Query 42098 TCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCC 42157 ||| | || | | | || | || || || || |||||||| || | |||||||| Sbjct 215899 TCTGTACTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCT 215840 Query 42158 AACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 || ||||| | || || ||||| || || || || ||||||||||| || ||||| || Sbjct 215839 AATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 215781 >seq3130 Length=1765 Score = 356 bits (394), Expect = 7e-94 Identities = 493/686 (72%), Gaps = 8/686 (1%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACA 41320 ||||||||||| | ||||||||||| || | ||||| || | ||| ||| | | || Sbjct 1336 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGAC--TGCA 1280 Query 41321 ACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGA 41377 |||| | |||||||||||||| | | || || || || || || ||||| || || Sbjct 1279 ACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGT 1220 Query 41378 GAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCG 41437 || || || |||| || | | ||||| ||||| || || || || ||| | |||| Sbjct 1219 GAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCT 1160 Query 41438 AGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAA 41497 | | || |||||| | ||||| |||||||||||||||||||| | ||||||| Sbjct 1159 ACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAG 1100 Query 41498 TGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTT 41557 ||| | ||||| ||||| || | | || | || | |||||| | |||| || | Sbjct 1099 TGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 1040 Query 41558 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTT 41617 ||| ||||| || ||||||||||| || | || || || ||| | || ||||| | Sbjct 1039 TGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 980 Query 41618 GTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGA 41677 ||||| || || |||||||| || ||||| |||||||| ||| | ||||||| |||| Sbjct 979 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATTGGT 920 Query 41678 CAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTG 41737 || || ||| ||||||| |||||| || || ||||| || || ||||||| ||| | Sbjct 919 CAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATT 860 Query 41738 GTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGC 41797 || |||||||| |||||||| || ||||||||||| ||||||||| | ||||| || || Sbjct 859 GTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGT 800 Query 41798 GTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATT 41857 ||||| ||||| | ||| |||||| || ||| | |||| || || | || Sbjct 799 GTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATC 740 Query 41858 CGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAG 41917 | || || |||||| | | || || ||||||||| |||||||||||||||||| Sbjct 739 AGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGGAAGAG 680 Query 41918 ACTTACAATATTGTTGCTGCTCACGG 41943 |||| |||||||| || ||||| || Sbjct 679 ACTT--AATATTGTGGCCGCTCATGG 656 >seq3676 Length=461187 Score = 255 bits (282), Expect = 2e-63 Identities = 380/536 (71%), Gaps = 6/536 (1%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACA 41320 ||||||||||| | ||||||| || || | ||||| || | ||| || | | || Sbjct 288216 AACCGTCTTTACATCGGATGGTCCGATGTTTTGATGATCCC-TACCTTATTAAC--TGCA 288272 Query 41321 ACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGA 41377 |||| | |||||||||||||| | | || || || || || || ||||| || || Sbjct 288273 ACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGT 288332 Query 41378 GAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCG 41437 || || || | || | | ||||| ||||| || || || || ||| | |||| Sbjct 288333 GAGCCTGTTTTCGATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCT 288392 Query 41438 AGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAA 41497 | | || |||||| | ||||| |||||||||||||||||||| | ||||||| Sbjct 288393 ACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAG 288452 Query 41498 TGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTT 41557 ||| | ||||| ||||| || | | || | || | |||||| | |||| || | Sbjct 288453 TGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 288512 Query 41558 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTT 41617 ||| ||||| || ||||||||||| || | || || || ||| | || ||||| | Sbjct 288513 TGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 288572 Query 41618 GTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGA 41677 ||||| || || |||||||| || | ||| |||||||| ||| | ||||||| |||| Sbjct 288573 GTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATTTATCCTATTGGT 288632 Query 41678 CAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTG 41737 || || ||| ||||||| |||||| || || ||||| || || ||||||| ||| | Sbjct 288633 CAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATT 288692 Query 41738 GTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGC 41793 || ||||||| |||||||| || ||||||||||| |||| |||| | ||||| || Sbjct 288693 GTATTCCAGGTAGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGC 288748 >seq4136 Length=310402 Score = 174 bits (192), Expect = 5e-39 Identities = 159/201 (79%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 41900 TTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTT 41959 ||||||||||||||||||||||| |||||||| || ||||| || || ||||| || | Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 41960 ATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGG 42019 ||||||||||||||||| ||||| || || ||| | | || ||||| | ||||| ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 42020 CCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAAT 42079 ||||| ||||| |||||||| |||| | || | ||| |||||||||||| | || Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 42080 GGTTTCAACTTTAACCAATCT 42100 || ||||| || ||||||||| Sbjct 3093 GGATTCAATTTCAACCAATCT 3073 >seq203 Length=971741 Score = 104 bits (114), Expect = 7e-18 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42022 TGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGG 42081 ||| ||||| |||||||| |||| | || | ||| |||||||||||| | || || Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 42082 TTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGA 42141 ||||| || ||||||||| | | | | | || | || || || || |||||||| Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 42142 CATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTT 42201 || | |||||||| || ||||| | || || ||||| || || || || |||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 42202 CCCGCTTGACCTTGC 42216 ||| || ||||| || Sbjct 778002 CCCTCTAGACCTAGC 778016 >seq292 Length=938337 Score = 84.2 bits (92), Expect = 6e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 41899 GTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCT 41958 ||| ||| |||||||||||||||| | |||||| | ||||| || || ||||| || | Sbjct 129989 GTTAGGTTAAGAGGAAGAGACTTATATTATTGTGGTCGCTCATGGTTACTTTGGCCGATT 130048 Query 41959 TATCTTCCAATATGCTAGCTTTAATA 41984 |||||| |||||||||| ||||||| Sbjct 130049 AATCTTCTAATATGCTAGTTTTAATA 130074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146206548469488