Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq4204 489 4e-134 seq3130 356 7e-94 seq3676 259 1e-64 seq4136 190 6e-44 seq203 125 2e-24 >seq4204 Length=279751 Score = 489 bits (542), Expect = 4e-134 Identities = 706/994 (71%), Gaps = 19/994 (2%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || |||||| | ||| || | ||||||||||| | || ||||| Sbjct 216757 TGGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTC 216698 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | |||| || | ||| |||||| |||| |||| Sbjct 216697 GGTGTTTTGATGAT-CCCTACCTTATTGACTGCAACTTC-TGTATTTATTATCGCCTTCA 216640 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 | | ||||||| ||||| |||||||| |||||||| ||||| ||| | ||| | || | Sbjct 216639 TCACAGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTT 216580 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 |||| ||||| || |||||||||||| | | |||| | || || ||| | || | Sbjct 216579 ATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACT 216520 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | || |||||||| | |||| || ||| | ||||||||||| |||||| Sbjct 216519 TTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATG 216460 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 |||| | || | |||||| | | ||| | | ||| |||| || || ||||||| Sbjct 216459 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 216400 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 | | ||| || || ||| | || ||||| |||||| || | Sbjct 216399 TGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTT-------------- 216354 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 ||| ||||| || ||| | | ||||| |||| ||||| ||| || ||||| |||| Sbjct 216353 -AGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGC 216295 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 || | || || || ||||| |||||||| ||| | || |||||||| || || ||||| | Sbjct 216294 CTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCC 216235 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 |||||||||| || || ||| | ||||| || || ||||| || || || | ||| | Sbjct 216234 TTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTG 216175 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||||||| | || |||||| | | | | ||||| |||||||| ||| Sbjct 216174 CTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTG 216115 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 ||| | || |||| || ||||||||||| ||||||||||| ||||| || || |||| Sbjct 216114 CTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATG 216055 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACT 43057 |||||||||| || | |||||||||||||| ||||| || ||| ||||| |||| Sbjct 216054 GTTACTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACT 215995 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| | || |||||||| || || ||||||||||||||| || | || | ||||||| Sbjct 215994 TCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTA 215935 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177 |||| || ||| | || || || || || |||||||| | |||||| || || | Sbjct 215934 TGGCTTTCAACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCG 215875 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || ||||||||||||||| | || ||||| || ||||| | || || ||||||| Sbjct 215874 TTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACG 215815 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 | || ||||| || |||||||| || || || || Sbjct 215814 AACGTAATGCTCACAACTTCCCTCTAGACCTAGC 215781 >seq3130 Length=1765 Score = 356 bits (394), Expect = 7e-94 Identities = 495/687 (72%), Gaps = 6/687 (1%) Strand=Plus/Minus Query 42316 AACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTAC 42374 ||||||||||| | || ||||| ||||| ||||||| |||| || | | |||| || Sbjct 1336 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGAT-CCCTACCTTATTGACTGCAAC 1278 Query 42375 CACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTG 42433 | ||| |||||| |||| ||||| || |||||||| ||||| |||||||| ||||||| Sbjct 1277 TTC-TGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTG 1219 Query 42434 AACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTA 42493 | ||||| ||||| ||| | || ||||| ||||| || |||||||||||| | | |||| Sbjct 1218 AGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTA 1159 Query 42494 GCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAAT 42553 | || || ||| | || || || | || |||||||| | |||| || | Sbjct 1158 CTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGT 1099 Query 42554 GGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCT 42613 || | ||||||||||| |||||| |||| | || | |||||| | | ||| | | Sbjct 1098 GGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTT 1039 Query 42614 CTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTG 42673 ||| |||| || || |||||||| | ||| || || ||| | || ||||| || Sbjct 1038 GTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTG 979 Query 42674 TTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGC 42733 |||| || || || ||||| || || || ||||| || ||| | | ||||| |||| | Sbjct 978 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTC 919 Query 42734 AAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGG 42793 |||| ||| || ||||| |||||| | || || || ||||| |||||||| ||| | | Sbjct 918 AAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTG 859 Query 42794 TCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCG 42853 | |||||||| || || ||||| ||||||||||| || || ||| | ||||| || || | Sbjct 858 TATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTG 799 Query 42854 TATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGC 42913 |||| ||||| || | ||| ||||| |||||| | || |||||| | | | Sbjct 798 TATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATCA 739 Query 42914 GTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGA 42973 | ||||| |||||||| ||| ||| |||| |||| || ||||||||||| |||| Sbjct 738 GGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGGAAGAGA 679 Query 42974 CTTATAACATTGTTGCAGCGCATGGTT 43000 || ||| ||||| || || ||||||| Sbjct 678 CT--TAATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 259 bits (286), Expect = 1e-64 Identities = 427/611 (70%), Gaps = 9/611 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || |||||| | | | || | ||||||||||| | || |||| Sbjct 288180 TGGGGTCGCTTCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCC 288239 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 | ||| ||||||| |||| || | |||| || | ||| |||||| |||| |||| Sbjct 288240 GATGTTTTGATGAT-CCCTACCTTATTAACTGCAACTTC-TGTATTTATTATCGCCTTCA 288297 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 | || |||||||| ||||| |||||||| |||||||| ||||| | | ||| | || | Sbjct 288298 TCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTT 288357 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 |||| ||||| || |||||||||||| | | |||| | || || ||| | || | Sbjct 288358 ATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACT 288417 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | || |||||||| | |||| || ||| | ||||||||||| |||||| Sbjct 288418 TTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATG 288477 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 |||| | || | |||||| | | ||| | | ||| |||| || || ||||||| Sbjct 288478 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 288537 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 | | ||| || || ||| | || ||||| |||||| || || || ||||| || | Sbjct 288538 TGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 288597 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 || ||||| || ||| | | ||||| |||| ||||| ||| || ||||| |||| Sbjct 288598 TTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGC 288657 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 || | || || || ||||| |||||||| ||| | || ||||||| || || ||||| | Sbjct 288658 CTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCC 288717 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 |||||||||| || | ||| | ||||| || | ||||| || || | ||| | Sbjct 288718 TTATGCATCCATTTCGCATGTTAGGTGTAGC-----TGTTTGGCGGTTCCCTATTCAGTG 288772 Query 42878 CTATGCATGGT 42888 ||||||||||| Sbjct 288773 CTATGCATGGT 288783 >seq4136 Length=310402 Score = 190 bits (210), Expect = 6e-44 Identities = 189/245 (77%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 42955 TTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTT 43014 || ||||||||||| ||||||||||| ||||| || || |||||||||||||| || | Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 43015 ATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGG 43074 |||||||||||||| ||||| || ||| ||||| |||||||| | || |||||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 43075 CCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAAT 43134 || || || ||||||||||||||| || | || | ||||||||||| || ||| | || Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 43135 GGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCT 43194 || || || || |||||||| | ||||||| || || || || |||||||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 43195 GATAT 43199 ||||| Sbjct 3033 GATAT 3029 >seq203 Length=971741 Score = 125 bits (138), Expect = 2e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 43078 GTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGT 43137 || || ||||||||||||||| || | || | ||||||||||| || ||| | || || Sbjct 777823 GTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGA 777882 Query 43138 TTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGAT 43197 || || || |||||||| | ||||||| || || || || ||||||||||||| Sbjct 777883 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGAT 777942 Query 43198 ATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTC 43257 || | || ||||| || ||||| | || || |||||||| || ||||| || |||||| Sbjct 777943 ATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTC 778002 Query 43258 CCGCTTGATCTTGC 43271 || || || || || Sbjct 778003 CCTCTAGACCTAGC 778016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143525092468056