Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq4204 466 5e-127 seq3130 343 4e-90 seq3676 286 1e-72 seq4136 154 4e-33 seq203 102 2e-17 seq4428 96.9 1e-15 >seq4204 Length=279751 Score = 466 bits (516), Expect = 5e-127 Identities = 691/976 (71%), Gaps = 19/976 (2%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| |||||||| ||||| | || || ||| Sbjct 215781 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 215840 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | | || | ||| | ||| || Sbjct 215841 GCACGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGGCTATCAAGTACAGA 215899 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || || || |||||||| || ||||| || | ||||| | || || | Sbjct 215900 TTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 215959 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| | ||||| || | |||||| ||| ||||| Sbjct 215960 CCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAA 216019 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || ||||||| |||||||| || || || || ||||||||||| || Sbjct 216020 ACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATAAGT 216079 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 |||||| ||||| ||||| | || || | ||| || | | || || ||||| Sbjct 216080 CTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTCCCT 216139 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 216140 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 216199 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 ||||| ||||| ||| || ||||| ||||| || || || || ||||| |||||||| Sbjct 216200 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATAC 216259 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 | ||||||||| ||||||||||| || || | |||||| |||||| ||||| ||||| Sbjct 216260 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 216319 Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 || | |||||||| ||||| || || ||| ||| ||||||||| Sbjct 216320 ACCAATAGGATAAATCAAGAAAACAGC-------------AGT--AGCTAAATATGCAAC 216364 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGC 26535 | ||||| || | ||| || || | | || |||||||||| | || ||| Sbjct 216365 AGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACA 216424 Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| ||| Sbjct 216425 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTGTATAACCA 216484 Query 26596 CTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 ||| || | | |||||||||| || |||||||| || | |||||| || ||| | Sbjct 216485 CTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGT 216544 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || ||||||||||| || | ||| || | ||||| ||||| Sbjct 216545 AGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACTAGAAACAGGCTC 216604 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| |||||||| | || |||| ||||||||| | ||||| ||| | || Sbjct 216605 ACGAATACCATCAATATCTACTAGAGGGGCTGTGATGAAGGCGATAATAAATACA-GAAG 216663 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | |||| || ||||| | || ||||||||||| | || |||||||| | Sbjct 216664 TTGCAGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTT 216723 Query 26835 CAGTACTTGTAACCCA 26850 | || || || | ||| Sbjct 216724 CGGTGCTAGTTATCCA 216739 >seq3130 Length=1765 Score = 343 bits (380), Expect = 4e-90 Identities = 496/696 (71%), Gaps = 4/696 (1%) Strand=Plus/Plus Query 26150 CCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTC 26209 || || || || ||||||||| |||||||| ||||| ||||| | || |||| ||| Sbjct 656 CCATGAGCGGCCACAATATTAA--GTCTCTTCCTCTTGACCAAATCTGTAACCATCATTA 713 Query 26210 TGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATA 26269 || | | || || ||||| || | || || ||||| || || ||| Sbjct 714 GCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGTATA 773 Query 26270 GCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATG 26329 ||| ||| || | |||||||| || ||||| ||||| ||| || ||||| ||||| Sbjct 774 GCACTGAATAGGGAACCACCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATA 833 Query 26330 AGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGA 26389 || || || || ||||| |||||||| | ||||||||| ||||||||||| || || | | Sbjct 834 AGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAA 893 Query 26390 GGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCT 26449 ||||| |||||| ||||| ||||| || | |||||||| ||||| || || ||| Sbjct 894 GGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTAGCA 953 Query 26450 GCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGAT 26509 || | | || |||| |||||||||| ||||| || | ||| || || | | || Sbjct 954 GCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTC 1013 Query 26510 AGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGT 26569 |||||||||| | || ||| ||||| || | ||||||||| | | ||| || Sbjct 1014 AGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGC 1073 Query 26570 TGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAA 26629 | ||| || ||||||||||||| |||||| || | | |||||||||| || |||||| Sbjct 1074 TCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAA 1133 Query 26630 AAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCG 26689 || || | |||||| || ||| | || | | || || || || ||||||||||| Sbjct 1134 AAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCA 1193 Query 26690 TACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCG 26749 || | ||| || || ||||| |||||||| || ||||| |||||||| || || |||||| Sbjct 1194 TAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTGCG 1253 Query 26750 ATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCC 26808 |||||||| | ||||| ||| | ||| || | | |||| || ||||| | || || Sbjct 1254 ATGAAGGCGATAATAAATACA-GAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACC 1312 Query 26809 GAACCATCCCACATAGAGACGGTTCTCAGTACTTGT 26844 ||||||||| | || |||||||| || || || || Sbjct 1313 GAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGT 1348 >seq3676 Length=461187 Score = 286 bits (316), Expect = 1e-72 Identities = 414/582 (71%), Gaps = 7/582 (1%) Strand=Plus/Minus Query 26261 CCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAAT 26320 || ||||||||| ||| || | || || || |||| ||||| ||| | ||| Sbjct 288782 CCATGCATAGCACTGAATAGGGAACCGCCAAA-----CAGCTACACCTAACATGCGAAAT 288728 Query 26321 GGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAG 26380 || ||||| || || || || ||| | |||||||| | ||||||||| ||||||||||| Sbjct 288727 GGATGCATAAGGATGTTGTGCTCTACCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 288668 Query 26381 ATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACT 26440 || || | |||||| |||||| ||||| ||||| || | |||||||| ||||| || Sbjct 288667 ATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACA 288608 Query 26441 GCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGT 26500 || ||| | | | || |||| |||||||||| ||||| || | ||| || || Sbjct 288607 GCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGA 288548 Query 26501 CTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAG 26560 | | || |||||||||| | || ||| ||||| || | ||||||||| | Sbjct 288547 CGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGA 288488 Query 26561 ATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAG 26620 | ||| || | ||| || ||||||||||||| |||||| || | | |||||||||| Sbjct 288487 ACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAA 288428 Query 26621 ATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATA 26680 || |||||||| || | |||||| || ||| | || | | || || || || ||| Sbjct 288427 ATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATA 288368 Query 26681 TTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGC 26740 |||||||| || | ||| || || |||| |||||||| || ||||| |||||||| || Sbjct 288367 TTGTTTCCATAAAGTAAAGAATCGAAAACAGGCTCACGAATACCATCAATATCTACTGGA 288308 Query 26741 GGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCAT 26799 || |||||||||||||| | ||||| ||| | ||| || | | |||| || ||||| Sbjct 288307 GGGGCTGCGATGAAGGCGATAATAAATACA-GAAGTTGCAGTTAATAAGGTAGGGATCAT 288249 Query 26800 AAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACT 26841 | || || ||||||| | || |||||||| || || || Sbjct 288248 CAAAACATCGGACCATCCGATGTAAAGACGGTTTTCGGTGCT 288207 >seq4136 Length=310402 Score = 154 bits (170), Expect = 4e-33 Identities = 164/215 (76%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 25984 ATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACC 26043 ||| ||||| || ||||| || || || || |||||||| || ||||| || | ||||| Sbjct 3064 ATCAACTACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACC 3123 Query 26044 CATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACG 26103 | || || | ||| || || || || ||||||| ||| | ||||| || | |||||| Sbjct 3124 TAAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACG 3183 Query 26104 GCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGAC 26163 ||| |||||||| ||||| || || ||||||| |||||||| || || || || || Sbjct 3184 AGAGTTGTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCAC 3243 Query 26164 AATATTATATGTCTCTTCATCTTGCCCAAA-CTTA 26197 ||||||||| |||||||| ||||| ||||| |||| Sbjct 3244 AATATTATAAGTCTCTTCCTCTTGACCAAATCTTA 3278 >seq203 Length=971741 Score = 102 bits (112), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| |||||||| ||||| | || || ||| Sbjct 778016 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 777957 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | | || | ||| ||||| || Sbjct 777956 GCACGGTTGATGATATCAGCCCAAGTA-TTAATAACGCGACCTTGGCTATCAACTACAGA 777898 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || || || |||||||| || ||||| || | ||||| | || || | Sbjct 777897 TTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 777838 Query 26056 CCATATGCCAACAAC 26070 ||| || || || || Sbjct 777837 CCAAATCCCTACTAC 777823 >seq4428 Length=185154 Score = 96.9 bits (106), Expect = 1e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 26261 CCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAAT 26320 || |||| |||| ||| || | || ||||| || ||||| ||||| ||| || ||| Sbjct 19559 CCATGCAAAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAAT 19618 Query 26321 GGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAG 26380 | ||||| || || || | ||||| |||||||| | ||||||||| ||||||||||| Sbjct 19619 GAATGCATAAGGATGTTGTACTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 19678 Query 26381 ATACCAAGAGGCATTCCATCA 26401 || | | |||||| |||||| Sbjct 19679 ATTTCTAAAGGCATACCATCA 19699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147704068050240