Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq4204 585 3e-162 seq3130 434 1e-116 seq3676 329 4e-85 seq203 143 3e-29 seq4428 127 2e-24 >seq4204 Length=279751 Score = 585 bits (648), Expect = 3e-162 Identities = 725/990 (73%), Gaps = 23/990 (2%) Strand=Plus/Minus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| | || ||||| | || |||| |||||||||||| | | Sbjct 216747 TCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGA 216688 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | |||| || | || ||| |||||||||| | || |||| Sbjct 216687 TGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATCGCCTTCATCACAGCCCCTC 216628 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 ||||| ||||||||||||||||| || || || |||||||| | ||||| ||||| | Sbjct 216627 TAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAATA 216568 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | ||||||||||| || | |||| ||| || || || | ||||| || || |||| Sbjct 216567 TTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTT 216508 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| || ||||||||||||| |||||||| || |||| | || | || Sbjct 216507 GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTC 216448 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326 | |||||| | | || | ||| | | | |||||| |||||||||| || || Sbjct 216447 TACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 216391 Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386 |||| || |||||||||||||| ||||||||| | || || || | Sbjct 216390 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT---------TAGCTACT------G 216346 Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446 |||| ||| | |||||||| | |||||||| ||||||||||| |||||| | || | Sbjct 216345 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 216286 Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506 | ||||||||||| |||| |||| | || ||||| ||||| ||||| ||||||||||| | Sbjct 216285 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATC 216226 Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566 | || |||||| | || ||||| ||||| ||||| || || || ||| ||||||||| | Sbjct 216225 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 216166 Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626 |||| ||||| || ||| | ||| | ||||| ||||| | || ||| || | | Sbjct 216165 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGG 216106 Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686 |||||| || || ||||| ||||| |||||||| ||||| || |||||||| ||||| | Sbjct 216105 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTG 216046 Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746 | || | |||||||| ||||| || |||||||| | | | ||||||||| | | Sbjct 216045 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 215986 Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806 |||| |||||||| || | || ||| |||||| | ||| | || ||||| |||| Sbjct 215985 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 215926 Query 155807 ACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGA-CGCTAGTGGTAAAGTCATCCCT 155865 |||| ||||| ||||| |||||||| |||||| | || || | ||| || || | Sbjct 215925 ACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCA-AGGTCGCGTTATTAAT 215867 Query 155866 ACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAAC 155925 || ||||| || || | ||||| ||| |||||||||||||||||||||||| ||||| Sbjct 215866 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 215807 Query 155926 GCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 ||||||||||||||||| ||||| |||||| Sbjct 215806 GCTCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 434 bits (480), Expect = 1e-116 Identities = 511/689 (74%), Gaps = 8/689 (1%) Strand=Plus/Minus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || |||| |||||||||||| | ||||||||| | | | |||| Sbjct 1339 GAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACTGCA 1280 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || | || ||| |||||||||| || || ||||| ||||| ||||||||||||||| Sbjct 1279 ACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGT 1220 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 || || || ||||||||||| | ||||| ||||| || ||||||||||| || | ||| Sbjct 1219 GAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCT 1160 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 | ||| || || || | ||||| || || ||||||||||| ||| || |||||||| Sbjct 1159 ACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAG 1100 Query 155233 TGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 155292 ||||| |||||||| || |||| | || | || | |||||| | | || | | Sbjct 1099 TGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---A 1043 Query 155293 GCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATC 155349 || | | | |||||| |||||||||| || |||||| || |||||||||||||| Sbjct 1042 GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATT 983 Query 155350 TGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTC 155409 ||||||||| || || || || | ||||| ||||| ||| | |||||||| | Sbjct 982 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATT 923 Query 155410 GGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 155469 |||||||| ||||||||||| |||||| | || || ||||||||||| |||| |||| Sbjct 922 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 863 Query 155470 TTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCA 155529 | || ||||| ||||| ||||| ||||||||||| || || |||||| | || ||||| Sbjct 862 ATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 803 Query 155530 GGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTA 155589 ||||| |||||||| || || ||| |||||| || ||||| ||||| || ||| | Sbjct 802 GGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTG 743 Query 155590 ATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAA 155649 ||| | ||||| ||||| | || ||| || ||||||||| || || ||||| ||| Sbjct 742 ATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGGAA 683 Query 155650 GAAACTTATAACATTGTTGCTGCTCATGG 155678 || ||| ||| ||||| || |||||||| Sbjct 682 GAGACT--TAATATTGTGGCCGCTCATGG 656 >seq3676 Length=461187 Score = 329 bits (364), Expect = 4e-85 Identities = 436/604 (72%), Gaps = 11/604 (2%) Strand=Plus/Plus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||| | | || ||||| | || |||| |||| || |||| | | Sbjct 288190 TCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTGA 288249 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | |||| || | || ||| |||||||||| || || |||| Sbjct 288250 TGATCCCTACCTTATTAACTGCAACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCTC 288309 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| ||||||||||||||||| || || | ||||||| | ||||| ||||| | Sbjct 288310 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAATA 288369 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | ||||||||||| || | |||| ||| || || || | ||||| || || |||| Sbjct 288370 TTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTT 288429 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| || ||||||||||||| |||||||| || |||| | || | || Sbjct 288430 GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTC 288489 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326 | |||||| | | || | ||| | | | |||||| |||||||||| || || Sbjct 288490 TACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 288546 Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386 |||| || |||||||||||||| ||||||||| || || || || | | ||| | Sbjct 288547 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTG 288606 Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446 |||| ||| | |||||||| | |||||||| ||||||||||| |||||| | || | Sbjct 288607 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 288666 Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506 | ||||||||||| |||| |||| | || ||||| | ||| ||||| ||||||||||| | Sbjct 288667 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATC 288726 Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566 | || | |||| | || ||||| |||| || || || || ||| ||||||||| | Sbjct 288727 CATTTCGCATGTTAGGTGTAGC-----TGTTTGGCGGTTCCCTATTCAGTGCTATGCATG 288781 Query 155567 GTTC 155570 |||| Sbjct 288782 GTTC 288785 >seq203 Length=971741 Score = 143 bits (158), Expect = 3e-29 Identities = 142/181 (78%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 155776 ACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 155835 |||||| | ||| | || ||||| |||||||| ||||| ||||| |||||||| ||| Sbjct 777841 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTCAACCAATCT 777900 Query 155836 GTAGTAGAC-GCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGG 155894 ||||| || || | ||| || || ||| ||||| || || | ||||| ||| Sbjct 777901 GTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAA 777959 Query 155895 TCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGC 155954 |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| Sbjct 777960 TCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 778019 Query 155955 T 155955 | Sbjct 778020 T 778020 >seq4428 Length=185154 Score = 127 bits (140), Expect = 2e-24 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 155427 TGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGA 155486 ||||| |||||| | | || ||||||||||| |||| |||| | || ||||| ||||| Sbjct 19699 TGATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 19640 Query 155487 ACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATC 155546 |||| ||||||||||| | || |||||| | || ||||| ||||| ||||| || || Sbjct 19639 GTACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTC 19580 Query 155547 TCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGA 155606 || ||| |||| |||| ||||| ||||| || ||| | ||| | ||||| ||||| Sbjct 19579 CCTATTCAGTGCTTTGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGA 19520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584802142190320