Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq4204 489 4e-134 seq3130 367 4e-97 seq3676 318 2e-82 seq4136 131 5e-26 seq203 127 6e-25 seq4428 100 8e-17 >seq4204 Length=279751 Score = 489 bits (542), Expect = 4e-134 Identities = 709/993 (71%), Gaps = 27/993 (3%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| || Sbjct 215777 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 215836 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGC-GTCTACTA 40647 | | | ||| | | ||||||||||||| ||| || ||| || || || | || Sbjct 215837 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACC-TTGGCTATCAAGTA 215895 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || || || || ||||| |||||||||||| ||||| | | | Sbjct 215896 CAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAG 215955 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTG 40766 | | ||| || || | || || ||||| ||||| |||||||||| | ||| ||| Sbjct 215956 TGAACCAAATCCCTACTACAGGCCAAGCAGCCAAG-AAGAAGTGTAAAGAACGAGAGTTG 216014 Query 40767 TTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTA 40826 || || ||||||||| || |||| || ||||||||||| || || || || || ||| Sbjct 216015 TTAAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTA 216074 Query 40827 TAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTC 40886 |||||||| | || |||||||| | || || | || |||||| |||| ||||| Sbjct 216075 TAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTT 216134 Query 40887 TCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 |||| || | | |||| || ||||| || ||||||||| || | | ||| Sbjct 216135 TCCCTGATCAAACTAGAGG--TTACCAAGG-AACCATGCATAGCACTGAATAGGGAACCG 216191 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCT 41003 || || || || || || || | ||| || ||||| ||||| || |||||||| ||||| Sbjct 216192 CCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCC 216251 Query 41004 TGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 ||||| |||| ||| |||||||| || ||| ||||||||||||||||||||||||||| Sbjct 216252 TGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAA 216311 Query 41064 GAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTG 41123 || ||||| | ||||||| ||||| ||||| | |||| Sbjct 216312 CTTCCTTGACCAATAGGATAAATCAAGAAAACAGC---------------AGTAGCTAAA 216356 Query 41124 TATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCA 41183 ||||| ||| ||||| || | |||||| || | | | |||||||||| | ||| Sbjct 216357 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCC 216416 Query 41184 GCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTG 41243 || ||||| || | ||| ||||| | ||||| || | ||| || ||||| ||| Sbjct 216417 ATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTG 216476 Query 41244 TATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCG 41303 |||| |||||| || | | | |||||||| |||||||| || || | |||||| || Sbjct 216477 TATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCC 216536 Query 41304 TTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAA 41363 ||| | |||| | || ||||| ||||||||||| || || | ||| || | ||| Sbjct 216537 GCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACTAGAA 216596 Query 41364 ACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA- 41422 || |||||||| || ||||| |||||||| | || |||| ||| |||||||| || || Sbjct 216597 ACAGGCTCACGAATACCATCAATATCTACTAGAGGGGCTGTGATGAAGGCGATAATAAAT 216656 Query 41423 ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAG 41482 ||| | || ||||| | ||| | || ||||| | ||||| ||||| || | ||| || Sbjct 216657 ACA-GAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAG 216715 Query 41483 GCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| ||||||||||| | |||||| || || Sbjct 216716 ACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 216748 >seq3130 Length=1765 Score = 367 bits (406), Expect = 4e-97 Identities = 512/711 (72%), Gaps = 10/711 (1%) Strand=Plus/Plus Query 40804 AACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGT 40863 |||| || || || || || ||| |||||| | || |||||||| | || || | | Sbjct 654 AACCATGAGCGGCCACAATATTA--AGTCTCTTCCTCTTGACCAAATCTGTAACCATCAT 711 Query 40864 TCTGTGATTCAGTTTCCGTGGTCTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGT 40920 | |||||| |||| ||||| |||| || | | |||| || ||||| || | Sbjct 712 TAGCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGT--TACCAAGGAA-CCAT 768 Query 40921 GCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGT 40980 | |||||| || | | |||||| || || || || || || | ||| || ||||| | Sbjct 769 GTATAGCACTGAATAGGGAACCACCGAATACACCAGCTACACCTAACATGTGAAATGGAT 828 Query 40981 GCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTC 41040 |||| || |||||||| ||||| ||||| |||| ||| |||||||| || ||| |||| Sbjct 829 GCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTC 888 Query 41041 CTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTA 41100 ||||||||||||||||||||||| || ||||| | ||||||| ||||| ||||| Sbjct 889 CTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACAGCAG 948 Query 41101 GAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGT 41160 ||| |||| | ||||||| ||||| ||| ||||| || | |||||| || | | Sbjct 949 TAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGA 1008 Query 41161 ATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAA 41220 | |||||||||| | ||| || ||||| || | ||| ||||| | |||| Sbjct 1009 AACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAA 1068 Query 41221 TGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTG 41280 | || | ||| || ||||| ||||||| |||||| || | | | |||||||| |||| Sbjct 1069 TTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTG 1128 Query 41281 GGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGT 41340 |||| || || | |||||| || ||| | |||| | || ||||| |||||||||| Sbjct 1129 GGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGT 1188 Query 41341 TCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTG 41400 | || || | ||| || || ||||| |||||||| || ||||| |||||||| || || | Sbjct 1189 TTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGG 1248 Query 41401 CTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGC 41459 ||||||| |||||||| || || ||| | || ||||| | ||| | || ||||| | Sbjct 1249 CTGCGATGAAGGCGATAATAAATACA-GAAGTTGCAGTCAATAAGGTAGGGATCATCAAA 1307 Query 41460 ACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTA 41510 ||||| ||||| || | ||| || ||||| ||||||||||| | || |||| Sbjct 1308 ACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCGGTTA 1358 >seq3676 Length=461187 Score = 318 bits (352), Expect = 2e-82 Identities = 432/600 (72%), Gaps = 7/600 (1%) Strand=Plus/Minus Query 40917 CCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAAT 40976 || ||||||||| || | | ||| ||||| | || || || | ||| | ||| Sbjct 288782 CCATGCATAGCACTGAATAGGGAACCGCCAAACA-----GCTACACCTAACATGCGAAAT 288728 Query 40977 GGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTG 41036 || ||||| || |||||||| ||| | ||||| |||| ||| |||||||| || ||| Sbjct 288727 GGATGCATAAGGATGTTGTGCTCTACCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 288668 Query 41037 ATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACA 41096 ||||||||||||||||||||||||||| || ||||| | ||||||| ||||| ||| Sbjct 288667 ATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACA 288608 Query 41097 GCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGT 41156 || ||| ||| | ||||||| ||||| ||| ||||| || | |||||| || Sbjct 288607 GCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGA 288548 Query 41157 CTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAG 41216 | | | |||||||||| | ||| || ||||| || | ||| ||||| | Sbjct 288547 CGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGA 288488 Query 41217 ACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAG 41276 ||||| || | ||| || ||||| ||||||| |||||| || | | | |||||||| Sbjct 288487 ACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAA 288428 Query 41277 ATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATA 41336 |||||||| || || | |||||| || ||| | |||| | || ||||| |||||| Sbjct 288427 ATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATA 288368 Query 41337 TTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGC 41396 ||||| || || | ||| || || |||| |||||||| || ||||| |||||||| || Sbjct 288367 TTGTTTCCATAAAGTAAAGAATCGAAAACAGGCTCACGAATACCATCAATATCTACTGGA 288308 Query 41397 GGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCAT 41455 || |||||||| |||||||| || || ||| | || ||||||| ||| | || ||||| Sbjct 288307 GGGGCTGCGATGAAGGCGATAATAAATACA-GAAGTTGCAGTTAATAAGGTAGGGATCAT 288249 Query 41456 TAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | ||| | |||| || | ||| || ||||| ||||||||| | | |||||| || || Sbjct 288248 CAAAACATCGGACCATCCGATGTAAAGACGGTTTTCGGTGCTATTTATCCAGTTGCAGAA 288189 >seq4136 Length=310402 Score = 131 bits (144), Expect = 5e-26 Identities = 183/250 (73%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 40607 ATCAGCCCAAGTAGGAATGACTTTACCATTAGC-GTCTACTACTGACTGGTTAAAGTTAA 40665 ||||||||||||| ||| || ||| || || || ||||| || ||||| || || | Sbjct 3031 ATCAGCCCAAGTATTAATAACGCGACC-TTGGCTATCAACTACAGATTGGTTGAAATTGA 3089 Query 40666 AACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATAA 40725 | || || ||||| |||||||||||| ||||| | | || | ||| || || | | Sbjct 3090 ATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTA 3149 Query 40726 CCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGA 40784 | || ||||| ||||| |||||||||| | ||| ||||| || ||||||||| Sbjct 3150 CAGGCCAAGCAGCCAAG-AAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGG 3208 Query 40785 AATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGA 40844 || |||| || ||||||||||| || || || || || ||||||||||| | || ||| Sbjct 3209 AAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATAAGTCTCTTCCTCTTGA 3268 Query 40845 CCAAA-CTTA 40853 ||||| |||| Sbjct 3269 CCAAATCTTA 3278 >seq203 Length=971741 Score = 127 bits (140), Expect = 6e-25 Identities = 133/172 (77%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| || Sbjct 778020 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 777961 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACTA 40647 | | | ||| | | ||||||||||||| ||| || ||| || || || |||| Sbjct 777960 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACC-TTGGCTATCAACTA 777902 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACC 40699 | || ||||| || || || || || ||||| |||||||||||| ||||| Sbjct 777901 CAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACC 777850 >seq4428 Length=185154 Score = 100 bits (110), Expect = 8e-17 Identities = 139/192 (72%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 40869 GATTCAGTTTCCGTGGTCTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATA 40925 |||||| |||| ||||| |||| || | | |||| || ||||| || |||| | Sbjct 19511 GATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCAAA 19567 Query 40926 GCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATG 40985 ||| || | | ||| || || || || || || || | ||| || |||| ||||| Sbjct 19568 GCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGAATGCATA 19627 Query 40986 AGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAA 41045 || ||||||| ||||| ||||| |||| ||| |||||||| || ||| ||| ||||| Sbjct 19628 AGGATGTTGTACTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTTCTAAA 19687 Query 41046 GGCATACCATCA 41057 |||||||||||| Sbjct 19688 GGCATACCATCA 19699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143694683360748