Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq4204 549 2e-151 seq3130 407 2e-108 seq3676 300 2e-76 seq4136 163 3e-35 seq203 145 9e-30 seq4428 141 1e-28 seq1536 91.5 2e-13 >seq4204 Length=279751 Score = 549 bits (608), Expect = 2e-151 Identities = 692/951 (73%), Gaps = 27/951 (3%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 215777 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 215836 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||| | ||| || ||||||||| ||| || | |||| | |||| Sbjct 215837 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACG---CGACCTTGGCTATCAAG 215893 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| ||||| ||||| |||||||| |||||||| | ||| | || Sbjct 215894 TACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGC 215953 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 ||||||||| || | || ||||| | ||||| | ||||||||| | | | ||||| Sbjct 215954 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 216013 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||| ||| ||||| |||||||| || || || ||||| |||||||| || ||||| || Sbjct 216014 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATT 216073 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||||||||| ||||| || || ||||||| | || || || | ||||| || Sbjct 216074 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCATTTTCAGTGGT 216133 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | ||| || || | ||||| ||||||||||| || || ||||| || Sbjct 216134 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 216193 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || ||||| ||||||||||||||||||||||| || Sbjct 216194 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTG 216253 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | ||| |||| ||||||||||| || || | |||||| | ||||||||| Sbjct 216254 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 216313 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||| | |||||| | |||||| |||| | | ||| | || Sbjct 216314 TCCTTGACCAATAGGATAAATCAAGAAAACAG---------------CAGTAGCTAAATA 216358 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC--- 68011 ||| ||| ||||||||||||||||| |||||| || |||||||||| |||||| Sbjct 216359 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 216418 Query 68012 ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATT 68071 | | | ||| | || | | |||||| | || | || | |||| || ||||| Sbjct 216419 ATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATT 216475 Query 68072 ATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGC 68131 || ||||||||||| | || ||| |||||||| || || || ||||| | ||||| || Sbjct 216476 GTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGC 216535 Query 68132 GTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGC 68191 ||| |||||| || |||||||| || || ||||| || || | | |||| | Sbjct 216536 CGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACTAGA 216595 Query 68192 AACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAA 68251 |||||| || | |||||||| ||||| ||| |||| |||| ||||| || || || || Sbjct 216596 AACAGGCTCACGAATACCATCAATATCTACTAGAGGGGCTGTGATGAAGGCGATAATAAA 216655 Query 68252 GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 || | ||| | | ||| ||| |||||||| ||||||||||| || Sbjct 216656 TACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCC 216706 >seq3130 Length=1765 Score = 407 bits (450), Expect = 2e-108 Identities = 494/671 (74%), Gaps = 8/671 (1%) Strand=Plus/Plus Query 67635 CCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTC 67694 |||||||| || ||||| || |||||||||| ||||| || || ||||||| | || Sbjct 656 CCATGAGCGGCCACAATATT--AAGTCTCTTCCTCTTGACCAAATCTGTAACCATCATTA 713 Query 67695 TGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATA 67754 || || | ||||| ||||| ||||| | | ||| || || | ||||| || ||| Sbjct 714 GCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGTATA 773 Query 67755 GCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATA 67814 ||||| || || ||||||||||||||||| ||||| || | ||| || ||||| |||||| Sbjct 774 GCACTGAATAGGGAACCACCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATA 833 Query 67815 AGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGA 67874 ||||||||||||||||| ||||| || | ||| |||| ||||||||||| || || | | Sbjct 834 AGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAA 893 Query 67875 GGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCT 67934 ||||| | ||||||||| |||||||| | |||||| | |||||| ||||| || Sbjct 894 GGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTAGCA 953 Query 67935 GCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAA 67994 || | || ||||| || ||||| ||| ||||||||||||||||| |||||| || Sbjct 954 GCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTC 1013 Query 67995 AGTTCCCACTGACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACA 68051 |||||||||| |||||| | | | ||| | || | | |||||| | || | Sbjct 1014 AGTTCCCACTCACGACCCATATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATT 1070 Query 68052 AGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGA 68111 || | |||| || ||||| || ||||||||||| | || ||| |||||||| || || Sbjct 1071 AGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGG 1130 Query 68112 TAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTA 68171 || ||||| | ||||| || ||| |||||| || |||||||| || || ||||| Sbjct 1131 TAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTT 1190 Query 68172 CCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCT 68231 || || | | ||||| | |||||| || | |||||||| ||||| |||||||| ||| Sbjct 1191 CCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCT 1250 Query 68232 GCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACA 68291 || ||||| || || || || || | ||| | | ||| ||| |||||||| ||| Sbjct 1251 GCGATGAAGGCGATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACA 1310 Query 68292 CCGAACCAACC 68302 |||||||| || Sbjct 1311 CCGAACCATCC 1321 >seq3676 Length=461187 Score = 300 bits (332), Expect = 2e-76 Identities = 405/563 (72%), Gaps = 11/563 (2%) Strand=Plus/Minus Query 67743 GAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGG 67802 ||||| ||||||||||| || || ||||| || || | ||||| || | ||| | Sbjct 288785 GAACCATGCATAGCACTGAATAGGGAACCGCCAAACA-----GCTACACCTAACATGCGA 288731 Query 67803 AATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCA 67862 ||||| ||||||||||||||||||||| | ||||| || | ||| |||| ||||||||| Sbjct 288730 AATGGATGCATAAGGATGTTGTGCTCTACCTGGAATACAATCATAAAGTTGAAAGTACCA 288671 Query 67863 GAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAAC 67922 || || || | |||||| | ||||||||| |||||||| | |||||| | |||||| Sbjct 288670 GATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAA 288611 Query 67923 ACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCA 67982 ||||| || | | || ||||| || ||||| ||| ||||||||||||||||| Sbjct 288610 ACAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCC 288551 Query 67983 AGACGGTAAGAAAGTTCCCACTGACGACC---ACAGTATGCTGTGATTCCGATAAGGAAG 68039 |||||| || |||||||||| |||||| | | | ||| | || | | |||| Sbjct 288550 AGACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCT---ACACCAAGTAAGAAG 288494 Query 68040 TGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCT 68099 || | || | || | |||| || ||||| || ||||||||||| | || ||| ||| Sbjct 288493 TGTAGAACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCT 288434 Query 68100 TCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAA 68159 ||||| || || || ||||| | ||||| || ||| |||||| || |||||||| Sbjct 288433 TCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAG 288374 Query 68160 ATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCA 68219 || || ||||| || || | | ||| | |||||| || | |||||||| ||||| Sbjct 288373 ATAATATTGTTTCCATAAAGTAAAGAATCGAAAACAGGCTCACGAATACCATCAATATCT 288314 Query 68220 ACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGA 68279 |||||||| ||||| ||||| || || || || || | ||| | | ||| ||| Sbjct 288313 ACTGGAGGGGCTGCGATGAAGGCGATAATAAATACAGAAGTTGCAGTTAATAAGGTAGGG 288254 Query 68280 ATCATCAACACACCGAACCAACC 68302 |||||||| ||| || |||| || Sbjct 288253 ATCATCAAAACATCGGACCATCC 288231 >seq4136 Length=310402 Score = 163 bits (180), Expect = 3e-35 Identities = 190/255 (75%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 67427 GTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTG 67483 ||| | ||| || ||||||||| ||| || | |||| | ||||| || ||||| Sbjct 3022 GTTGATGATATCAGCCCAAGTATTAATAACG---CGACCTTGGCTATCAACTACAGATTG 3078 Query 67484 GTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCA 67543 |||||| ||||| ||||| |||||||| |||||||| | ||| | ||||||||||| Sbjct 3079 GTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCA 3138 Query 67544 GATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGA 67603 || | || ||||| | ||||| | ||||||||| | | | |||||||| ||| Sbjct 3139 AATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACT 3198 Query 67604 TGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTC 67663 ||||| |||||||| || || || ||||| |||||||| || ||||| || |||||||| Sbjct 3199 AGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATAAGTCTC 3258 Query 67664 TTCTTCTTGTCCGAA 67678 ||| ||||| || || Sbjct 3259 TTCCTCTTGACCAAA 3273 >seq203 Length=971741 Score = 145 bits (160), Expect = 9e-30 Identities = 149/192 (78%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 778020 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 777961 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT--GC-GTCAAC 67474 || | ||| | ||| || ||||||||| ||| || | |||| || ||||| Sbjct 777960 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAAC---GCGACCTTGGCTATCAAC 777904 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| ||||| ||||| |||||||| |||||||| | ||| | || Sbjct 777903 TACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGC 777844 Query 67535 AGTGAACCAGAT 67546 ||||||||| || Sbjct 777843 AGTGAACCAAAT 777832 >seq4428 Length=185154 Score = 141 bits (156), Expect = 1e-28 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 67707 TCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGT 67766 ||||| ||||| ||||| | | ||| || || | ||||| |||| |||||| || || Sbjct 19520 TCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCAAAGCACTGAATAGG 19579 Query 67767 GAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGC 67826 ||||| ||||||||||| ||||| || | ||| || |||| |||||||||||||||| | Sbjct 19580 GAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGAATGCATAAGGATGTTGTAC 19639 Query 67827 TCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCAT 67879 ||||| ||||| || | ||| |||| ||||||||||| || | | |||||| Sbjct 19640 TCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTTCTAAAGGCAT 19692 >seq1536 Length=687949 Score = 91.5 bits (100), Expect = 2e-13 Identities = 177/252 (70%), Gaps = 22/252 (9%) Strand=Plus/Plus Query 67590 GAGTTGTTGAAAGATGC----ATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645 |||||||| |||| | | ||| | |||||| || || || ||||| ||||||| | Sbjct 571024 GAGTTGTT-AAAGCTACTCGTATATTAGAAGATTAATCGGCCAAAGTAACCATGAGTGAC 571082 Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAAC---CG-TAGT--TCTGT-G 67698 ||||| || |||||||||||||||| | | || ||||||| || |||| | || | Sbjct 571083 CACAATATTATAAGTCTCTTCTTCTTAT-CAAATTTGTAACTCTCGTTAGTCGTTAGTAG 571141 Query 67699 ACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCAC 67758 | || | || ||| |||| |||||| | | ||| || || | ||| ||||||| Sbjct 571142 ATTCATTCT-AGTGGTTT-TCTGATCAAACTAGAGGTTACCAAAGA-------ATAGCAC 571192 Query 67759 TAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGA 67818 | | || |||| | | |||||||| ||||| | | || | ||||| ||||||| | Sbjct 571193 TGAGCAGGGAACAATCCAATACACCCGCTACATCTAATATGTAAAATGGATGCATAAAAA 571252 Query 67819 TGTTGTGCTCTG 67830 || ||||| ||| Sbjct 571253 TGCTGTGCGCTG 571264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566915153309520