Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq4204 619 1e-172 seq3130 470 2e-127 seq3676 361 6e-95 seq4136 179 4e-40 seq203 143 3e-29 seq4428 134 2e-26 seq2035 122 1e-22 seq1181 82.4 9e-11 >seq4204 Length=279751 Score = 619 bits (686), Expect = 1e-172 Identities = 732/989 (74%), Gaps = 19/989 (2%) Strand=Plus/Plus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 |||||| ||||| |||||||||||||| || ||||| || ||||| ||||||||||| | Sbjct 215777 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 215836 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958 | ||| ||||||| | || ||||| ||| | ||| ||| |||||||| | Sbjct 215837 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAAGTAC 215896 Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018 ||| |||||||| ||||| || || |||||||| ||||| || |||| ||| | ||||| Sbjct 215897 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 215956 Query 68019 GAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTT 68078 |||||| || || || |||||||| ||||| | ||||||||| | ||||| |||||||| Sbjct 215957 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 216016 Query 68079 GAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTA 68138 || ||||| |||||||| | || || ||||| ||||| || || ||||| || || Sbjct 216017 AAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCCACAATATTATA 216076 Query 68139 AGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||||||||| |||||||| || ||||||| | || || ||| ||||||||||||| Sbjct 216077 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCATTTTCAGTGGTTTC 216136 Query 68199 ACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAA 68258 | | || ||| || |||| |||||||||||| |||||||| || || || || || Sbjct 216137 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 216196 Query 68259 TACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 68318 ||| ||||| || || | ||| || || || ||||| ||||||||||||||||| ||||| Sbjct 216197 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAA 216256 Query 68319 CACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACC 68378 || | ||| |||||||||||||||| || || | |||||| | |||||||| || Sbjct 216257 TACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCC 216316 Query 68379 TTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGC 68438 |||||| | |||||| | || ||| | || ||| || | ||||| Sbjct 216317 TTGACCAATAGGATAAATCAAGAAAA---------------CAGCAGTAGCTAAATATGC 216361 Query 68439 AACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTA 68498 |||| ||||||||||||||||| ||||| | |||||||| ||||| ||||| || Sbjct 216362 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATA 216421 Query 68499 TGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAA 68558 | | ||||| | |||||| | | | || | |||| || |||||||| || Sbjct 216422 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTGTATAA 216481 Query 68559 CCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGA 68618 ||||||||||| | ||| ||||||||||| || |||||||| | || || || || Sbjct 216482 CCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGA 216541 Query 68619 ACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGG 68678 | |||||| || |||||||| || || ||||| ||||| || | |||| || |||||| Sbjct 216542 AGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACTAGAAACAGG 216601 Query 68679 TTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGA 68737 |||||||||||||| || || || | || || | ||||||||||| || || ||||| Sbjct 216602 CTCACGAATACCATCAATATCTACTAGAGGGGCTGTGATGAAGGCGATAATAAATACAGA 216661 Query 68738 TGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGG 68796 ||||| | ||| || ||||||||||||| || |||||||| || | |||||| ||| Sbjct 216662 -AGTTGCAGTCAATAAG-GTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGG 216719 Query 68797 TTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 || || ||| ||| | ||| | |||||| Sbjct 216720 TTTTCGGTGCTAGTTATCCAGTTGCAGAA 216748 >seq3130 Length=1765 Score = 470 bits (520), Expect = 2e-127 Identities = 523/692 (76%), Gaps = 6/692 (1%) Strand=Plus/Plus Query 68116 CCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTC 68175 ||||| || || ||||| || |||||||||| |||||||| || ||||||||| || Sbjct 656 CCATGAGCGGCCACAATATT--AAGTCTCTTCCTCTTGACCAAATCTGTAACCATCATTA 713 Query 68176 TGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATT 68235 || ||| ||||||||||||| | | || ||| || |||| ||||||||| || Sbjct 714 GCAGATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGTATA 773 Query 68236 GCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATC 68295 |||||||| || || ||||| ||||| ||||| || || | ||| || || || ||||| Sbjct 774 GCACTGAATAGGGAACCACCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATA 833 Query 68296 AGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGA 68355 ||||||||||||||||| ||||| || | ||| |||||||||||||||| || || | | Sbjct 834 AGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAA 893 Query 68356 GGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCT 68415 ||||| | |||||||| |||||||| | |||||| | || ||| || || | || Sbjct 894 GGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAAAACAGCAGTAGCA 953 Query 68416 GCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAA 68475 ||||||||||| || || ||||||||| ||||||||||||||||| ||||| | Sbjct 954 GCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTC 1013 Query 68476 AGTTCCCATTCACGTCCCATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGT 68535 |||||||| ||||| ||||| || | | ||||| | |||||| | | | || Sbjct 1014 AGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGC 1073 Query 68536 TGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAA 68595 | |||| || |||||||| ||||||||||||| | ||| ||||||||||| || ||| Sbjct 1074 TCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAA 1133 Query 68596 AAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCA 68655 ||||| | || || || ||| |||||| || |||||||| || || ||||| ||| Sbjct 1134 AAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCA 1193 Query 68656 TACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCG 68715 || || | ||||||| |||||| |||||||||||||| || || || || || || ||| Sbjct 1194 TAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCTGCG 1253 Query 68716 ATGAAGGCGACGATGAA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGC 68773 |||||||||| || || ||||| ||||| | ||| || ||||||||||||| || | Sbjct 1254 ATGAAGGCGATAATAAATACAGA-AGTTGCAGTCAATAAG-GTAGGGATCATCAAAACAC 1311 Query 68774 CGAACCAACCAACGTAAAGGCGGTTCTCTGTG 68805 ||||||| || | |||||| ||||| || ||| Sbjct 1312 CGAACCATCCGATGTAAAGACGGTTTTCGGTG 1343 >seq3676 Length=461187 Score = 361 bits (400), Expect = 6e-95 Identities = 444/604 (74%), Gaps = 7/604 (1%) Strand=Plus/Minus Query 68223 GGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATG 68282 |||||||||||| |||||||| || || || ||||| |||| || || | ||| | Sbjct 288786 GGAACCATGCATAGCACTGAATAGGGAACCGCCAAA-----CAGCTACACCTAACATGCG 288732 Query 68283 GAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACC 68342 || || ||||| ||||||||||||||| | ||||| || | ||| ||||||||||||| Sbjct 288731 AAATGGATGCATAAGGATGTTGTGCTCTACCTGGAATACAATCATAAAGTTGAAAGTACC 288672 Query 68343 AGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAA 68402 ||| || || | |||||| | |||||||| |||||||| | |||||| | || ||| Sbjct 288671 AGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGATAAATCAAGAA 288612 Query 68403 GACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACC 68462 || || | || |||||||||| || || ||||||||| ||||||||||||||||| Sbjct 288611 AACAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACC 288552 Query 68463 AAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAGATACCAATCAGGAAGTG 68522 ||||| | |||||||| ||||| ||||| || | | ||||| | |||||| Sbjct 288551 CAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTG 288492 Query 68523 AAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTC 68582 | | | || | |||| || |||||||| ||||||||||||| | ||| ||||| Sbjct 288491 TAGAACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTC 288432 Query 68583 CCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAAT 68642 |||||| || |||||||| | || || || ||| |||||| || |||||||| || Sbjct 288431 CCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGAT 288372 Query 68643 GATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCAC 68702 || ||||| ||||| || | ||| | |||||| |||||||||||||| || || || Sbjct 288371 AATATTGTTTCCATAAAGTAAAGAATCGAAAACAGGCTCACGAATACCATCAATATCTAC 288312 Query 68703 AGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTGCAAGCAGCGTAGGGA 68761 || || || ||||||||||||| || || ||||| ||||| | | | ||||||| Sbjct 288311 TGGAGGGGCTGCGATGAAGGCGATAATAAATACAGA-AGTTGCAGTTAATAAGGTAGGGA 288253 Query 68762 TCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTCACCCATTCGC 68821 |||||| || || |||| || | |||||| ||||| || ||| | | | ||| | || Sbjct 288252 TCATCAAAACATCGGACCATCCGATGTAAAGACGGTTTTCGGTGCTATTTATCCAGTTGC 288193 Query 68822 AGAA 68825 |||| Sbjct 288192 AGAA 288189 >seq4136 Length=310402 Score = 179 bits (198), Expect = 4e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 67948 CTATCAAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACA 68007 ||||||| | ||| |||||||| ||||| || || |||||||| ||||| || |||| | Sbjct 3062 CTATCAACTACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATA 3121 Query 68008 CCAAGTGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAA 68067 || | ||||||||||| || || || |||||||| ||||| | ||||||||| | ||| Sbjct 3122 CCTAAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAA 3181 Query 68068 CGGGAGTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCA 68127 || |||||||| || ||||| |||||||| | || || ||||| ||||| || || Sbjct 3182 CGAGAGTTGTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAGTAACCATGAGCGGCC 3241 Query 68128 ACAATGTTGTAAGTCTCTTCTTCTTGACCGAA 68159 ||||| || ||||||||||| |||||||| || Sbjct 3242 ACAATATTATAAGTCTCTTCCTCTTGACCAAA 3273 >seq203 Length=971741 Score = 143 bits (158), Expect = 3e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 |||||| ||||| |||||||||||||| || ||||| || ||||| ||||||||||| | Sbjct 778020 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 777961 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958 | ||| ||||||| | || ||||| ||| | ||| ||| ||||||| | Sbjct 777960 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 777901 Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018 ||| |||||||| ||||| || || |||||||| ||||| || |||| ||| | ||||| Sbjct 777900 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 777841 Query 68019 GAACCAGATACCAACGACA 68037 |||||| || || || ||| Sbjct 777840 GAACCAAATCCCTACTACA 777822 >seq4428 Length=185154 Score = 134 bits (148), Expect = 2e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 68179 GACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCA 68238 || ||| ||||||||||||| | | || ||| || |||| ||||||||||| ||| Sbjct 19511 GATTCATTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCAAAGCA 19570 Query 68239 CTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGG 68298 ||||| || || || || ||||| ||||| || || | ||| || || | ||||| ||| Sbjct 19571 CTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGAATGCATAAGG 19630 Query 68299 ATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGC 68358 ||||||| |||||| ||||| || | ||| |||||||||||||||| || | | |||| Sbjct 19631 ATGTTGTACTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTTCTAAAGGC 19690 Query 68359 AT 68360 || Sbjct 19691 AT 19692 >seq2035 Length=9416 Score = 122 bits (134), Expect = 1e-22 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 66674 ACCTTCATTCAATAGAATGTTCTTTGTGTAGAACGTCTCGAACTCTGGGTCTTCTGCTGC 66733 ||| ||||| || | ||| || || |||||||| ||||| || || || ||||| ||||| Sbjct 3652 ACCCTCATTTAAAACAATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATCTTCCGCTGC 3711 Query 66734 TCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACC 66793 | ||| || | ||| ||||||||||| ||||| ||||| ||||| || || | | || Sbjct 3712 ACGGATTTCCTAGGAAACAAAGTCATAGGCACGTAGGTTCAGAGCTAGGCCGACTACGCC 3771 Query 66794 GATGGAACTTGTCCAAAGACCCATAACAGGAACAAACAACATAAAGAAATGCAACCACCT 66853 || | ||| |||| | ||| | || || ||||| | ||||||||||| ||||| | Sbjct 3772 AATAGCACTCATCCATAAACCGGTGACGGGTACAAATAGCATAAAGAAATATAACCAACG 3831 Query 66854 CTTATTG 66860 |||||| Sbjct 3832 TTTATTG 3838 >seq1181 Length=731501 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 30250 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 30307 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||| ||||| Sbjct 30308 TCTACCACTGAGCTACCGAGGA 30329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572022064625040