Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4234 156 1e-32 seq4423 116 1e-20 seq4414 98.7 3e-15 seq4324 86.0 2e-11 seq1592 86.0 2e-11 >seq4234 Length=244235 Score = 156 bits (172), Expect = 1e-32 Identities = 242/342 (71%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | ||| || ||||||||| ||| | | || || Sbjct 219585 ATTTCTTACAGTACCATCATACTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 219644 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| |||||| ||| ||||| ||||| |||||||| ||||| | | |||||| Sbjct 219645 CTGGATATATCCAGTTTCAGAAGTTTTCACAGCGGTATCAATCAGACCTTCTCTACCACC 219704 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| || || | | | ||| |||| || || Sbjct 219705 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGGCCTCTGAGGTAAGAGTTCTCCACAAA 219764 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 ||||| || || || ||| ||||| ||||| |||| || | | || | | Sbjct 219765 TCCACGACTTTCAGGACCATAGTCATCTTTGGTGAAGTGGGGCAATGTTC-GATCGATGA 219823 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 |||| ||||||| ||||| || ||||| ||||||||||| | || | | |||| || Sbjct 219824 -AGCCAAATGGGATCCGCTTACCCTCAACATTCTGCTGTCCGACACAAGCAGTCATTTGT 219882 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||||||| | |||||| || ||||| ||| | |||||| Sbjct 219883 GAAATATTGATGAAACTGCCTTTCGAGCCTGCAGTGACCATA 219924 >seq4423 Length=186807 Score = 116 bits (128), Expect = 1e-20 Identities = 341/512 (67%), Gaps = 20/512 (4%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| | |||| | | ||| |||| || || ||||| || ||||| || || Sbjct 100491 CTGTCAAAACGTCCAGGCCTAAGTAAAGCTGAATCCAAGATATCAGCCCTGTTGGTGGCA 100432 Query 288910 GCCAATACAACAATAGATTCGGTTTGC---TTAAATCCATCCATACTTGTTAAAATTTGA 288966 || | ||||||| | | || | | | ||| |||||||| || | | || Sbjct 100431 GCAA---CAACAATTATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAACTGG 100375 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 || | || || ||||||||||||||| ||| | ||| ||| | || | ||||| Sbjct 100374 TTCAAAGTCTGCTCCCTTTCATCATTTCCACCACC--AAT-ACCTG--TCCC-CCTTTGC 100321 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC--AA 289084 | ||||||||||||||||| |||| || | | || |||| ||| | | || Sbjct 100320 CTTCCAACAGCATCAATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTC 100261 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||| ||| | || | || ||||| || |||| ||| ||| |||| || ||||| |||| Sbjct 100260 TTGAAAAGA--TCACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAACTCAG 100203 Query 289145 AAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 | | |||| |||| | |||| ||| ||||| ||||| | ||| | || || | Sbjct 100202 AGCCTGATA-TTGAGAAAAATGGCACACCAGCTTCTCCTGCAATAGCCTTGGCAAGCAAA 100144 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 |||||||| |||||||| || || | | ||||| ||||| || | || ||| || Sbjct 100143 GTCTTACCGGTTCCAGGAGGACCAACAAGCAGAACACCCTTAGGGATGCGAGCACCAACA 100084 Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC-TCAAGTTCATATTTTGC 289322 | | | | || || |||| || || || || | |||| | ||| || | |||||| Sbjct 100083 GCAGTGAACCTTTCTGGTTTCTTCAAGAACTCAACCACTTCCATGAAG-TCTTGTTTTGC 100025 Query 289323 CTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 |||||| || || |||||| |||| |||| Sbjct 100024 TTCATCAACACCAGCAACATCATCAAACGTAA 99993 >seq4414 Length=189502 Score = 98.7 bits (108), Expect = 3e-15 Identities = 338/512 (66%), Gaps = 20/512 (4%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| | |||| | | ||| |||| || || || || || ||||| || || Sbjct 71729 CTGTCAAAACGTCCAGGTCTAAGTAAAGCTGAATCCAAGATGTCAGCCCTGTTGGTGGCA 71670 Query 288910 GCCAATACAACAATAGATTCGGTTTGC---TTAAATCCATCCATACTTGTTAAAATTTGA 288966 || |||| ||||| | | || | | | ||| |||||||| || | | || Sbjct 71669 GC-AATA--ACAATTATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAACTGG 71613 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 || | || || ||||||||||||||| ||| | ||| ||| | || | ||||| Sbjct 71612 TTCAAAGTCTGCTCCCTTTCATCATTTCCACCACC--AAT-ACCTG--TCCC-CCTTTGC 71559 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC--AA 289084 | ||||||||||||||||| |||| || | | || |||| ||| | | || Sbjct 71558 CTTCCAACAGCATCAATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTGGCCTTC 71499 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||| ||| | || | || ||||| || |||| ||| ||| |||| || ||||| |||| Sbjct 71498 TTGAAAAGA--TCACGAACCCGGGAGGCACCAACACCCACAAACATCTCCACAAACTCAG 71441 Query 289145 AAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 | | |||| |||| | |||| ||| || || || || | ||| | || || | Sbjct 71440 AGCCTGATA-TTGAGAAAAATGGCACACCAGCCTCTCCCGCAATAGCCTTGGCAAGCAAA 71382 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 || ||||| |||||||| || || | | ||||| ||||| || | || ||| || Sbjct 71381 GTTTTACCAGTTCCAGGAGGACCAACAAGCAGAACACCCTTAGGGATGCGAGCACCAACA 71322 Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC-TCAAGTTCATATTTTGC 289322 | | | | || || |||| || || || || | |||| | ||| || | |||||| Sbjct 71321 GCGGTGAACCTTTCTGGTTTCTTCAAGAACTCAACCACTTCCATGAAG-TCTTGTTTTGC 71263 Query 289323 CTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 |||||| || || |||||| |||| |||| Sbjct 71262 TTCATCAACACCAGCAACATCATCAAATGTAA 71231 >seq4324 Length=1117780 Score = 86.0 bits (94), Expect = 2e-11 Identities = 116/161 (72%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 251413 CCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTG 251472 |||||||| | ||| |||||||| || | |||||| |||| |||||| ||||| Sbjct 311575 CCACACTTCTCACATACATGGACTCTAT--GCATCACTCTGGTCAAATAGCCTTTCCTTG 311632 Query 251473 GTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGA 251532 ||| || ||||| || | |||||| || || | |||||| || || || || ||| Sbjct 311633 AGGAAAAATGAAGCACCATGAGCAATCATGCAGTCCCTCTCCATCTCTCCAAAGCGGAGA 311692 Query 251533 CCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 ||||||||||| | | ||||| ||||| || | ||||| Sbjct 311693 CCACCATCGCGCGAGCACCCCTCTGCAGGTTGCCTGGTGAG 311733 >seq1592 Length=693907 Score = 86.0 bits (94), Expect = 2e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 184970 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 184911 Query 409011 TAGAACAtttttttAAA 409027 || ||||||||| || Sbjct 184910 GGGACCATTTTTTTTAA 184894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471732325647914