Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq4204 563 1e-155 seq3130 421 7e-113 seq3676 315 8e-81 seq4136 167 3e-36 seq203 147 2e-30 seq2035 129 6e-25 seq238 91.5 2e-13 seq4517 84.2 2e-11 seq4268 84.2 2e-11 seq4131 82.4 8e-11 >seq4204 Length=279751 Score = 563 bits (624), Expect = 1e-155 Identities = 701/961 (73%), Gaps = 17/961 (2%) Strand=Plus/Minus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 |||||||| || |||| ||||||||||| ||||||| || || | ||| | ||||| Sbjct 216721 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACTGCAACT 216662 Query 150926 ATTTGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 150985 | || || | || |||||| | || || | || || || ||||| || ||||| Sbjct 216661 TCTGTATTTATTATCGCCTTCATCACAGCCCCTCTAGTAGATATTGATGGTATTCGTGAG 216602 Query 150986 CCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCT 151045 || ||| || ||||| | | || || ||||| || ||||||||||| || ||||| || Sbjct 216601 CCTGTTTCTAGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACT 216542 Query 151046 TCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGG 151105 ||| || ||||| ||||||| || || || |||||||| || ||| | ||||| ||| Sbjct 216541 TCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGG 216482 Query 151106 CTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCT 151165 | ||||| || || |||| | || |||| | |||||| | ||||| | | | Sbjct 216481 TTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGT 216422 Query 151166 TACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GT 151224 || ||||||||||||||||||||| || ||| ||||||||||||| ||||| ||| || Sbjct 216421 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGT 216363 Query 151225 TGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCA 151284 |||||| | ||| | ||| || ||| | | |||||| | ||||| Sbjct 216362 TGCATATTTAGCTAC---------------TGCTGTTTTCTTGATTTATCCTATTGGTCA 216318 Query 151285 AGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGT 151344 ||| ||||||||||| ||||| | || || ||||| || ||||||| ||| |||| Sbjct 216317 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGT 216258 Query 151345 CTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGT 151404 ||||| |||||||||||||| || ||||| || || || ||| | ||||| |||||||| Sbjct 216257 ATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 216198 Query 151405 CTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCG 151464 ||||| || || || ||| || ||||| ||||| |||| || ||| || | | Sbjct 216197 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 216138 Query 151465 TGAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 151524 || ||||| ||||| || || || | ||||||| || |||||||| |||||||| Sbjct 216137 GGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGAC 216078 Query 151525 CTACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTT 151584 || || || || ||||| || ||||||||||| || | ||||||||||| ||| || Sbjct 216077 TTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTAATCTTCCAATATGCTAGTTT 216018 Query 151585 CAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 151644 ||||| || ||||| | ||||||||| | || || |||||||| || || || ||||| Sbjct 216017 TAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTT 215958 Query 151645 CACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 151704 |||||| | ||| | || || ||||| |||||||| ||||| ||||| |||||||| || Sbjct 215957 CACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTCAACCAATC 215898 Query 151705 CATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGG 151764 | | ||| | || || || | || || ||||| || | | |||||||| Sbjct 215897 TGTACTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAA 215838 Query 151765 TCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGC 151824 ||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct 215837 TCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 215778 Query 151825 T 151825 | Sbjct 215777 T 215777 >seq3130 Length=1765 Score = 421 bits (466), Expect = 7e-113 Identities = 507/686 (74%), Gaps = 4/686 (1%) Strand=Plus/Minus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 |||||||| || |||| ||||||||||| ||||||| || || | ||| | ||||| Sbjct 1336 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACTGCAACT 1277 Query 150926 ATTTGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 150985 | || || | || |||||||| || || || || || || ||||| || ||||| Sbjct 1276 TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAG 1217 Query 150986 CCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCT 151045 || ||| |||||||| | | || || ||||| || ||||||||||| || ||||| || Sbjct 1216 CCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACT 1157 Query 151046 TCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGG 151105 ||| || ||||| ||||||| || || || |||||||| || ||| | ||||| ||| Sbjct 1156 TCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGG 1097 Query 151106 CTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCT 151165 | ||||| || || |||| | || |||| | |||||| | ||||| | | | Sbjct 1096 TTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGT 1037 Query 151166 TACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GT 151224 || ||||||||||||||||||||| || ||| ||||||||||||| ||||| ||| || Sbjct 1036 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGT 978 Query 151225 TGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCA 151284 |||||| || ||||| ||||| ||||| | ||| || ||| | | |||||| | ||||| Sbjct 977 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCA 918 Query 151285 AGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGT 151344 ||| ||||||||||| ||||| | || || ||||| || ||||||| ||| |||| Sbjct 917 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGT 858 Query 151345 CTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGT 151404 ||||| |||||||||||||| || ||||| || || || ||| | ||||| |||||||| Sbjct 857 ATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 798 Query 151405 CTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCG 151464 |||||||| || || ||| || || || ||||| |||| || ||| || | | Sbjct 797 ATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATCAG 738 Query 151465 TGAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 151524 || ||||| ||||| || || || ||||||||| || |||||||| |||||||| Sbjct 737 GGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGGAAGAGAC 678 Query 151525 CTACAACATCGTTGCCGCACACGGTT 151550 | || || || ||||| || |||| Sbjct 677 TT--AATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 315 bits (348), Expect = 8e-81 Identities = 417/576 (72%), Gaps = 7/576 (1%) Strand=Plus/Plus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 |||||||| || |||| |||| || ||| ||||||| || || | || | ||||| Sbjct 288216 AACCGTCTTTACATCGGATGGTCCGATGTTTTGATGATCCCTACCTTATTAACTGCAACT 288275 Query 150926 ATTTGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 150985 | || || | || |||||||| || || || || || || ||||| || ||||| Sbjct 288276 TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAG 288335 Query 150986 CCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCT 151045 || ||| | |||| | | || || ||||| || ||||||||||| || ||||| || Sbjct 288336 CCTGTTTTCGATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACT 288395 Query 151046 TCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGG 151105 ||| || ||||| ||||||| || || || |||||||| || ||| | ||||| ||| Sbjct 288396 TCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGG 288455 Query 151106 CTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCT 151165 | ||||| || || |||| | || |||| | |||||| | ||||| | | | Sbjct 288456 TTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGT 288515 Query 151166 TACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GT 151224 || ||||||||||||||||||||| || ||| ||||||||||||| ||||| ||| || Sbjct 288516 TATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGT 288574 Query 151225 TGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCA 151284 |||||| || ||||| ||||| | ||| | ||| || ||| | | |||||| | ||||| Sbjct 288575 TGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCA 288634 Query 151285 AGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGT 151344 ||| ||||||||||| ||||| | || || ||||| || ||||||| ||| |||| Sbjct 288635 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGT 288694 Query 151345 CTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGT 151404 ||||| | |||||||||||| || ||||| || || | ||| | ||||| |||| Sbjct 288695 ATTCCAGGTAGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGCTG---- 288750 Query 151405 CTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTC 151440 || || || || || ||| || ||||| ||||| Sbjct 288751 -TTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTC 288785 >seq4136 Length=310402 Score = 167 bits (184), Expect = 3e-36 Identities = 157/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 151505 TTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTC 151564 || |||||||| |||||||| || || || || ||||| || ||||||||||| || | Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 151565 ATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGG 151624 ||||||||||| ||| || ||||| || ||||| | ||||||||| | || || ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 151625 CCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAAC 151684 ||||| || || || ||||||||||| | ||| | || || ||||| |||||||| ||| Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 151685 GGTTTCAACTTCAACCAGTC 151704 || ||||| |||||||| || Sbjct 3093 GGATTCAATTTCAACCAATC 3074 >seq203 Length=971741 Score = 147 bits (162), Expect = 2e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 151627 TGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGG 151686 ||| || || || ||||||||||| | ||| | || || ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 151687 TTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGA 151746 ||||| |||||||| || | | ||| | || || || | || || ||||| || Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 151747 CGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTT 151806 | | |||||||| ||| ||||||||||| |||||||| ||||||||||||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 151807 CCCTCTCGACCTTGCTGCT 151825 |||||| ||||| |||||| Sbjct 778002 CCCTCTAGACCTAGCTGCT 778020 >seq2035 Length=9416 Score = 129 bits (142), Expect = 6e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 153095 CTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTT 153154 ||||| ||||||||| ||| | ||||||||||||| |||||||| || | ||| | | Sbjct 3845 CTTTTTTCAATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTAT 3786 Query 153155 GGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAT 153214 ||| | ||||||| | | || || ||||| || || ||||| || || ||||| | Sbjct 3785 GGATGAGTGCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTT 3726 Query 153215 CTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCC 153274 | | |||||| | || | |||||||||||||||||||| ||||| || || ||||| Sbjct 3725 CCTAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTG 3666 Query 153275 TTTTGAACGAAGGT 153288 |||| || || ||| Sbjct 3665 TTTTAAATGAGGGT 3652 >seq238 Length=82349 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/134 (76%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 152407 GGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACT 152466 || |||||||| || | || ||||| ||||||| | ||| | || |||||| |||| Sbjct 49492 GGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACA 49433 Query 152467 GGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGG-AGGG 152525 ||||||||||| | || ||||||||| || || ||||| ||||||||| ||| ||| Sbjct 49432 GGGACTACTTTTGTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGT 49373 Query 152526 CGCAAACTTTCTTA 152539 |||| ||||||| Sbjct 49372 TGCAA--TTTCTTA 49361 >seq4517 Length=143961 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 153064 AACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTC 153123 ||||| || || ||| | || ||||| |||||||| ||||||||| ||| | |||||| Sbjct 80646 AACCGCTTTTGATCCTAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 80587 Query 153124 TTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTT 153183 |||||||| |||||||| || | ||| | |||| | ||||||| | | || || Sbjct 80586 TTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTA 80527 Query 153184 GCTCTCAATCT 153194 ||||| || || Sbjct 80526 GCTCTGAACCT 80516 >seq4268 Length=1125959 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 153217 CAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTT 153276 || |||||| | || | |||||||||||||||||||| ||||| || || ||||| ||| Sbjct 683086 CAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTT 683027 Query 153277 TTGAACGAAGGTCTTCGTGCTTGG 153300 || ||||| ||| ||||||| ||| Sbjct 683026 TTAAACGAGGGTATTCGTGCGTGG 683003 >seq4131 Length=315116 Score = 82.4 bits (90), Expect = 8e-11 Identities = 132/187 (71%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 151044 CTTCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAAT 151103 ||||| || || || ||||||| || | || |||||||| || | | | ||||| | Sbjct 226340 CTTCTGCGGCGATTGGATTGCACTTTTACCTAATTTGGGAAGCTGCATATGTTGATGAGT 226399 Query 151104 GGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATG 151163 || | ||||| | || |||| | || |||| | |||||| || || || || Sbjct 226400 GGTTATACAATAGCGGCCCTTATGAGCTAATTGTTCTACACTTC----TTACTAGCT-TG 226454 Query 151164 CTTACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCG 151223 || ||||||||||||||||||||| || | | ||||||||||||| ||||| | Sbjct 226455 -TTGTATGGGTCGTGAGTGGGAACTGAGTTTCAGTCTGGGTATGCGTCCTTGGATTGTTG 226513 Query 151224 TTGCATA 151230 ||||||| Sbjct 226514 TTGCATA 226520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549591332593840